DDX6

General Information

Gene Name       : DDX6
Gene ID             : ENSG00000110367.12
Essential Gene : Yes

Functions

Localization(RBPImage: DDX6)

Domains (AlphaFold: DDX6)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DDX6ENSG00000110367.1245.6640.8643.26ENCSR000AEF
HepG2DDX6ENSG00000110367.1221.2933.8727.58ENCSR985KAT
K562DDX6ENSG00000110367.1239.2239.1339.17ENCSR000AEO

Assays

5 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 577ENCSR893EFUDDX6K562ReleasedENCAB348UONENCSR207DWI  
eCLIPeCLIP: 589ENCSR141OIMDDX6HepG2ReleasedENCAB348UONENCSR099KAK  
knockdown followed by RNA-seq DDX6-BGKLV08-K562ENCSR119QWQDDX6K562ReleasedENCSR913CAE   shRNAKD% = 30.3,21.4
knockdown followed by RNA-seq DDX6-BGHLV12-HepG2ENCSR147ZBDDDX6HepG2ReleasedENCSR237YZT   shRNAKD% = 95.4,94.4
knockdown followed by RNA-seq DDX6-BGKcLV08-K562ENCSR298ASIDDX6K562ReleasedENCSR015KGT   CRISPRKD% = 52.7,50.8






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
DDX6577K562ENCSR893EFUENCSR207DWIENCAB348UONA300-460A1ReleasedENCODE3
DDX6589HepG2ENCSR141OIMENCSR099KAKENCAB348UONA300-460A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
DDX6ENCAB348UONA300-460A1Released, ENCODE3Released, ENCODE3BGHLV12-17, Released, ENCODE3BGKcLV08-29, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
DDX6K562shRNAENCSR119QWQENCSR913CAEDDX6-LV08-17,DDX6-LV08-18Nontarget-LV08-1_00003527,nontarget-LV08-2_0000352730.3,21.4ReleasedENCODE3
DDX6HepG2shRNAENCSR147ZBDENCSR237YZTDDX6-BGHLV12-17,DDX6-BGHLV12-18NT-BGHLV12-01,NT-BGHLV12-0295.4,94.4ReleasedENCODE3
DDX6K562CRISPRBGKcLV08-27,BGKcLV08-28BGKcLV08-1,BGKcLV08-221.2,21.6NotSatisfiedENCODE4
DDX6K562CRISPRENCSR298ASIENCSR015KGTDDX6-BGKcLV08-29,DDX6-BGKcLV08-30NT-BGKcLV08-1,NT-BGKcLV08-252.7,50.8ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    DDX6: Click to RBP Image Database
  • Cytoplasm
  • Compartment/Organelle
  • P bodies
  • Cytosolic












  • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    DDX6Product_ID: A300-460A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: DDX6-human
    HepG2_Bethyl_A300-406A_1_DDX6.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using DDX6 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-DDX6 antibody (lanes under 'DDX6').
    DDX6-HEPG2.png<br>Caption: Western blot following shRNA against DDX6 in HepG2 whole cell lysate using DDX6 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against DDX6. DDX6 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    K562_Bethyl_A300-406A_1_DDX6.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using DDX6 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-DDX6 antibody (lanes under 'DDX6').
    DDX6-K562-CRISPR.png<br>Caption: Western blot following CRISPR against DDX6 in K562 whole cell lysate using DDX6 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against DDX6.DDX6 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.








    RNA Targets

    • DDX6 protein binds to 2,518 RNA regions.  





    Proteins bound to RNA

    • DDX6 RNA is bound by 31 proteins.  






    DDX6 protein has 2,518 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 2,518 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    DDX6chr1166826596166826671-5.036186.00251K562TADA13'-UTR,intron-Distal
    DDX6chr1910099901010102-3.591399.95284K562TMEM2593'-UTR,intron-Distal,intron-Proximal
    DDX6chr1915773021577356-4.806463.80336K562MBD33'-UTR,intron-Distal
    DDX6chr6170686238170686304+6.2967722.10366HepG2FAM120Bintron-Distal
    DDX6chr12241910022419157+4.3642017.89347K562CDC423'-UTR
    DDX6chr129899538998995469+3.366257.48150K562SLC25A33'-UTR
    DDX6chr2188331440188331491-4.871349.10390HepG2TFPI3'-UTR,intron-Distal
    DDX6chr194095372440953779-3.1121814.03379K562BLVRB3'-UTR,intron-Distal,intron-Proximal
    DDX6chr203980414839804223+3.183903.56007K562PLCG13'-UTR,intron-Distal
    DDX6chr168786533787865366-4.456309.48076HepG2SLC7A53'-UTR,intron-Distal
    DDX6chr57393115173931219-3.506079.68919HepG2ENC1CDS,intron-Distal
    DDX6chr116236095662361040-3.9674213.81400K562MTA23'-UTR,intron-Distal
    DDX6chr2037656363765789-5.710149.75255K562CENPBCDS
    DDX6chr1228333210228333274+4.236377.99200K562GUK13'-UTR,5'-UTR,CDS,intron-Proximal
    DDX6chr63059391430593993+3.201185.39249K562MRPS18B3'-UTR
    DDX6chr760642316064259-3.4041718.88167K562EIF2AK13'-UTR,intron-Distal,intron-Proximal
    DDX6chr107357838273578423-4.0231114.39329K562PSAPCDS,intron-Distal
    DDX6chr121254352125501-4.154626.94725K562C1orf865'-UTR,CDS,intron-Distal,intron-Proximal
    DDX6chr116412221264122276+5.335917.04291K562CCDC88Bintron-Distal
    DDX6chr142379529423795328+3.4731225.99688K562PABPN13'-UTR
    DDX6chr1152907795290831-3.2327642.24418K562HBG2, HBE1CDS,intron-Distal
    DDX6chr7158343966158343992-7.11335400.00000HepG2PTPRN2intron-Distal
    DDX6chr23677615936776211+3.4064718.29492HepG2CRIM13'-UTR
    DDX6chr126635990866359971+5.046596.54999HepG2HMGA23'-UTR
    DDX6chr107403531174035433+5.36734400.00000K562DDIT43'-UTR
    DDX6chr7100173118100173286-6.4154537.50829HepG2LRCH4intron-Distal,intron-Proximal
    DDX6chr157724195777242028+4.308117.92222HepG2RCN23'-UTR
    DDX6chr191732120017321299+7.4101035.56069K562MYO9Bintron-Distal,intron-Proximal
    DDX6chr7148700707148700757-4.1679320.22055HepG2PDIA43'-UTR,intron-Distal
    DDX6chr7100804499100804542+5.743707.04291K562AP1S13'-UTR,intron-Distal
    DDX6chr12112460560112460605+4.031157.48372HepG2ERP293'-UTR
    DDX6chr224185585241855909-3.097305.94154K562PHF5A3'-UTR,intron-Distal
    DDX6chr201759439117594468-3.851766.25903K562RRBP13'-UTR,intron-Distal
    DDX6chr21047641610476440+5.9304232.11769K562HPCAL1intron-Distal
    DDX6chr1914087161408756+4.286145.91583K562DAZAP1intron-Distal
    DDX6chr1156280357156280439-3.562415.11124K562CCT33'-UTR,CDS,intron-Distal
    DDX6chr9136131978136132010-3.589985.24187K562ABOintron-Distal
    DDX6chr11966552619665569-3.328663.56007K562CAPZB3'-UTR,intron-Distal
    DDX6chr1914110021411049+3.554176.30386K562DAZAP1intron-Distal
    DDX6chr1150533121150533228+3.1767216.78457K562ADAMTSL43'-UTR
    DDX6chr177781262577812679-4.434633.90326K562CBX4intron-Distal
    DDX6chr34266126242661377+7.2877921.32337HepG2NKTRintron-Distal,intron-Proximal
    DDX6chr116484622164846301-3.382465.36775K562CDCA53'-UTR,intron-Distal
    DDX6chr195618179156181907+3.6669112.31696K562U2AF2intron-Distal
    DDX6chr178081073180810796+3.428314.63095K562TBCDintron-Distal
    DDX6chr174232673242326830-5.513987.04291K562SLC4A1, AC003102.13'-UTR,5'-UTR,intron-Distal
    DDX6chr675862897586337+3.091636.31397HepG2DSP3'-UTR
    DDX6chr10103541203103541278-5.2101430.93972K562NPM33'-UTR,intron-Distal,intron-Proximal
    DDX6chr107357705773577078-3.3391638.86652K562PSAP3'-UTR,intron-Distal
    DDX6chr34705810747058189-3.192055.06674K562SETD23'-UTR,intron-Distal,intron-Proximal
    DDX6chr43945583239455845-3.177888.57033K562RPL93'-UTR,intron-Distal
    DDX6chr3128216476128216500+4.625183.88917K562RP11-475N22.4intron-Distal
    DDX6chr7150784370150784416+4.286143.83202K562AGAP3intron-Distal,intron-Proximal
    DDX6chr1631045573104632-6.7415186.61892K562RP11-473M20.7intron-Distal
    DDX6chr48890419188904245+5.334348.56375HepG2SPP13'-UTR
    DDX6chr1914162611416330+3.133715.92128K562DAZAP1intron-Distal
    DDX6chr203980407239804127+5.447108.32559K562PLCG13'-UTR,intron-Distal
    DDX6chr142351965823519732-3.409984.05658K562CDH24intron-Distal
    DDX6chr11645149716451609-3.3855014.62997HepG2EPHA23'-UTR,intron-Distal
    DDX6chr159146348891463600+4.389199.20951K562MAN2A23'-UTR,intron-Distal
    DDX6chr178080815280808221+7.7912192.25653HepG2TBCDintron-Distal
    DDX6chr194937784649377881+4.152046.87502K562PPP1R15ACDS
    DDX6chr672493137249379+4.1429110.63106HepG2RREB13'-UTR
    DDX6chr1618389611839062+3.575184.29664K562NUBP23'-UTR
    DDX6chr194773143447731477-3.421464.54145K562BBC3CDS,intron-Distal
    DDX6chr2130878638130878750-5.5219315.67122HepG2POTEFintron-Distal
    DDX6chr14105814414105814471+5.078625.77022K562PACS2intron-Distal
    DDX6chr12124498740124498831+4.4703932.82099K562FAM101A, ZNF6643'-UTR,intron-Distal
    DDX6chr1120182772018336-3.9994112.12246K562H19intron-Distal,intron-Proximal
    DDX6chr1783691928369368+6.6971411.64918K562NDEL1intron-Distal
    DDX6chr8102217451102217518-3.417668.22088K562ZNF7065'-UTR,intron-Distal,intron-Proximal
    DDX6chr203601493436015027+4.1625315.47345HepG2SRCintron-Distal,intron-Proximal
    DDX6chr7140397315140397376+4.612183.44348K562NDUFB2intron-Distal
    DDX6chr7100171181100171253-3.235785.06674K562SAP25, LRCH45'-UTR,intron-Distal
    DDX6chr2240287647240287718-7.9124970.72920HepG2HDAC4intron-Distal
    DDX6chr156444808664448145-3.536185.18092K562PPIB3'-UTR,intron-Distal
    DDX6chr173807811938078182-3.3802042.19209HepG2ORMDL33'-UTR,intron-Distal
    DDX6chr16447735447785+5.2565614.33398K562NME45'-UTR,intron-Distal,intron-Proximal
    DDX6chr14105813348105813447+6.3390722.46040HepG2PACS2intron-Distal
    DDX6chr8101734158101734165-3.2215928.01801K562PABPC15'-UTR,intron-Distal,intron-Proximal
    DDX6chr650010975001183-4.806463.80336K562RPP40intron-Distal
    DDX6chr13678752136787612+5.1259812.84306K562SH3D21intron-Distal
    DDX6chr124941426049414336-4.836159.10390HepG2KMT2D3'-UTR,intron-Distal
    DDX6chr214628301346283033-6.24592400.00000HepG2PTTG1IPintron-Distal
    DDX6chr12110973219110973293-3.527224.54145K562PPTC73'-UTR,intron-Distal
    DDX6chr68841056188410655-3.9087014.48653K562AKIRIN2intron-Distal
    DDX6chrX7045953270459614-3.568245.50756K562ZMYM33'-UTR,intron-Distal
    DDX6chr194603010846030162+3.8528435.42795K562VASP3'-UTR
    DDX6chr222289027022890311-3.20401400.00000K562PRAME3'-UTR,intron-Distal,intron-Proximal
    DDX6chr13382071333820800+5.527015.63231K562RP11-415J8.5intron-Distal
    DDX6chr175616812356168180+4.6927621.07507K562DYNLL23'-UTR
    DDX6chr63294235032942372+4.4176610.83333K562BRD25'-UTR,CDS
    DDX6chr6160526987160527051+3.114804.76726K562IGF2R3'-UTR,intron-Distal
    DDX6chr93746526237465339-4.311455.08528K562ZBTB55'-UTR,intron-Distal
    DDX6chr21047618310476238+6.7953415.45271HepG2HPCAL1intron-Distal
    DDX6chr214556494645564990+3.530494.05658K562C21orf333'-UTR,intron-Distal
    DDX6chr43978022339780340+3.3854411.19786K562UBE2K3'-UTR
    DDX6chr13113761061113761165+5.1463018.88027HepG2F7CDS,intron-Distal,intron-Proximal
    DDX6chr22019266720192808-4.9154819.40661HepG2MATN33'-UTR,intron-Distal,intron-Proximal
    DDX6chr142148511921485182-3.625184.34553K562NDRG23'-UTR,intron-Distal




    31 proteins are bound to DDX6 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr11118620845118620855-3'-UTR,intron-Distal5.4501427.00370K562UPF1
    chr11118620401118620454-3'-UTR,intron-Distal4.43587400.00000K562UPF1
    chr11118620456118620495-3'-UTR,intron-Distal4.24075400.00000K562UPF1
    chr11118620410118620480-3'-UTR,intron-Distal5.4628337.26910HepG2FAM120A
    chr11118620785118620805-3'-UTR,intron-Distal3.9490436.82582K562UPF1
    chr11118622036118622059-3'-UTR,intron-Distal,intron-Proximal4.6442524.28739K562UPF1
    chr11118620480118620516-3'-UTR,intron-Distal4.206467.17321HepG2FAM120A
    chr11118620172118620210-3'-UTR,intron-Distal4.5579166.51001K562FAM120A
    chr11118620909118620963-3'-UTR,intron-Distal3.5651134.32333K562PUM2
    chr11118622085118622140-3'-UTR,intron-Distal4.510243.92497HepG2UPF1
    chr11118620210118620255-3'-UTR,intron-Distal5.1451864.14288K562FAM120A
    chr11118620398118620471-3'-UTR,intron-Distal6.35949400.00000K562FAM120A
    chr11118621136118621261-3'-UTR,intron-Distal3.415165.41153HepG2YBX3
    chr11118620738118620785-3'-UTR,intron-Distal3.8419448.23738K562UPF1
    chr11118621707118621759-3'-UTR,intron-Distal4.5466629.18706K562AKAP1
    chr11118621708118621761-3'-UTR,intron-Distal5.60869400.00000K562FAM120A
    chr11118621188118621217-3'-UTR,intron-Distal3.6068312.01139K562YBX3
    chr11118621664118621711-3'-UTR,intron-Distal3.634366.95082HepG2FAM120A
    chr11118622000118622036-3'-UTR,intron-Distal,intron-Proximal4.1104342.41458K562PUM2
    chr11118620322118620359-3'-UTR,intron-Distal5.72448400.00000K562FAM120A
    chr11118620744118620798-3'-UTR,intron-Distal4.6322262.87982K562FAM120A
    chr11118621668118621756-3'-UTR,intron-Distal3.7631911.56241HepG2UPF1
    chr11118620901118620962-3'-UTR,intron-Distal5.65281400.00000K562FAM120A
    chr11118622020118622033-3'-UTR,intron-Distal,intron-Proximal4.4633023.70834K562UPF1
    chr11118620910118620970-3'-UTR,intron-Distal4.0741210.71267HepG2UPF1
    chr11118621681118621756-3'-UTR,intron-Distal3.326195.34615HepG2STAU2
    chr11118620275118620322-3'-UTR,intron-Distal5.3290078.34606K562FAM120A
    chr11118621411118621440-3'-UTR,intron-Distal3.6500612.34190K562YBX3
    chr11118620488118620502-3'-UTR,intron-Distal5.4974671.53651K562FAM120A
    chr11118621249118621301-3'-UTR,intron-Distal3.4456112.09940K562YBX3
    chr11118621058118621093-3'-UTR,intron-Distal5.1636241.04063K562UPF1
    chr11118621680118621754-3'-UTR,intron-Distal3.637887.41961HepG2AKAP1
    chr11118621634118621660-3'-UTR,intron-Distal5.6638652.92398K562FAM120A
    chr11118620495118620502-3'-UTR,intron-Distal4.3946452.92871K562UPF1
    chr11118621708118621760-3'-UTR,intron-Distal4.0175454.07496K562PUM2
    chr11118621581118621599-3'-UTR,intron-Distal4.7301136.95397K562FAM120A
    chr11118620278118620312-3'-UTR,intron-Distal4.2791632.87716K562UPF1
    chr11118621163118621188-3'-UTR,intron-Distal4.5852624.95249K562YBX3
    chr11118621709118621754-3'-UTR,intron-Distal3.1338410.57049K562TIA1
    chr11118621619118621662-3'-UTR,intron-Distal4.6527210.19754K562AKAP1
    chr11118622001118622031-3'-UTR,intron-Distal,intron-Proximal4.5851841.47301K562FAM120A
    chr11118622096118622140-3'-UTR,intron-Distal3.3182653.14235K562UPF1
    chr11118620415118620513-3'-UTR,intron-Distal3.3634313.00895HepG2UPF1
    chr11118622396118622467-3'-UTR,intron-Distal4.636014.93188HepG2UPF1
    chr11118621715118621760-3'-UTR,intron-Distal6.57566400.00000K562UPF1
    chr11118621663118621692-3'-UTR,intron-Distal6.79215400.00000K562UPF1
    chr11118625305118625413-3'-UTR,intron-Distal,intron-Proximal4.239115.47926K562AQR
    chr11118622096118622125-3'-UTR,intron-Distal3.4053741.87615K562FAM120A
    chr11118621999118622064-3'-UTR,intron-Distal,intron-Proximal4.6547014.89180K562PUM1
    chr11118625394118625588-3'-UTR,CDS,intron-Distal,intron-Proximal3.012854.09398HepG2GRWD1
    chr11118621569118621611-3'-UTR,intron-Distal7.1631169.17996K562UPF1
    chr11118621506118621561-3'-UTR,intron-Distal5.053616.51488K562LIN28B
    chr11118622060118622143-3'-UTR,intron-Distal,intron-Proximal4.59853400.00000K562PUM2
    chr11118622183118622218-3'-UTR,intron-Distal3.1868330.58690K562FAM120A
    chr11118620628118620720-3'-UTR,intron-Distal3.735788.70240HepG2UPF1
    chr11118621637118621662-3'-UTR,intron-Distal6.6597087.40599K562UPF1
    chr11118621217118621249-3'-UTR,intron-Distal3.118458.09282K562YBX3
    chr11118621660118621708-3'-UTR,intron-Distal5.26939400.00000K562FAM120A
    chr11118621692118621715-3'-UTR,intron-Distal6.80036400.00000K562UPF1
    chr11118622091118622141-3'-UTR,intron-Distal4.371494.43128HepG2TIA1
    chr11118621662118621707-3'-UTR,intron-Distal5.5405425.64150K562AKAP1
    chr11118621561118621615-3'-UTR,intron-Distal4.084776.44064K562LIN28B
    chr11118621675118621708-3'-UTR,intron-Distal3.2140012.55096K562PUM2
    chr11118620043118620060-3'-UTR,intron-Distal8.61182400.00000K562FAM120A
    chr11118620620118620697-3'-UTR,intron-Distal3.1648315.31202K562AKAP1
    chr11118621663118621709-3'-UTR,intron-Distal3.413798.20147K562TIA1
    chr11118622392118622448-3'-UTR,intron-Distal4.011093.34655HepG2AKAP1
    chr11118620603118620661-3'-UTR,intron-Distal4.8620816.94227HepG2FAM120A
    chr11118621129118621163-3'-UTR,intron-Distal4.2539518.47562K562YBX3
    chr11118620471118620488-3'-UTR,intron-Distal5.85039400.00000K562FAM120A
    chr11118620550118620593-3'-UTR,intron-Distal4.8543934.99017K562FAM120A
    chr11118622500118622556-3'-UTR,intron-Distal4.170983.74511K562IGF2BP1
    chr11118621711118621722-3'-UTR,intron-Distal3.542125.48873HepG2FAM120A
    chr11118621611118621637-3'-UTR,intron-Distal6.2819373.98263K562UPF1
    chr11118621440118621476-3'-UTR,intron-Distal3.351107.98531K562YBX3
    chr11118621612118621643-3'-UTR,intron-Distal4.095203.95192HepG2UPF1
    chr11118621809118621910-3'-UTR,intron-Distal5.32814400.00000K562PUM2
    chr11118622125118622137-3'-UTR,intron-Distal3.1814929.53966K562FAM120A
    chr11118621671118621709-3'-UTR,intron-Distal4.8365812.06844K562PUM1
    chr11118621722118621758-3'-UTR,intron-Distal3.880674.83304HepG2FAM120A
    chr11118620900118620962-3'-UTR,intron-Distal4.74818400.00000K562UPF1
    chr11118620337118620391-3'-UTR,intron-Distal5.6936839.83253K562UPF1
    chr11118622037118622060-3'-UTR,intron-Distal,intron-Proximal4.2984362.44366K562PUM2
    chr11118620174118620229-3'-UTR,intron-Distal4.393204.90312HepG2FAM120A
    chr11118620649118620695-3'-UTR,intron-Distal3.263614.23616K562TIA1
    chr11118620886118620954-3'-UTR,intron-Distal4.3367313.67848HepG2FAM120A
    chr11118621709118621760-3'-UTR,intron-Distal5.5337520.88395K562PUM1
    chr11118620913118620962-3'-UTR,intron-Distal4.063267.15385HepG2AKAP1
    chr11118620819118620845-3'-UTR,intron-Distal5.6768343.07891K562UPF1
    chr11118620359118620390-3'-UTR,intron-Distal5.96494400.00000K562FAM120A
    chr11118622007118622053-3'-UTR,intron-Distal,intron-Proximal3.243073.20756HepG2UPF1
    chr11118661569118661711-5'-UTR,intron-Distal,intron-Proximal3.787886.22597HepG2EFTUD2
    chr11118661818118661860-5'-UTR,intron-Distal,intron-Proximal3.7857813.17366K562DDX3X
    chr11118661804118661818-5'-UTR,intron-Distal4.2852012.01671K562DDX3X
    chr11118657203118657228-5'-UTR,intron-Distal,intron-Proximal5.5911117.84130K562DDX3X
    chr11118657074118657222-5'-UTR,intron-Distal3.230538.18953K562FTO
    chr11118661773118661856-5'-UTR,intron-Distal,intron-Proximal3.183237.16842HepG2NCBP2
    chr11118661461118661576-5'-UTR,intron-Distal3.997875.55742HepG2PRPF4
    chr11118661584118661656-5'-UTR,intron-Distal,intron-Proximal4.674609.70584K562DDX3X
    chr11118661475118661572-5'-UTR,intron-Distal3.135383.46580HepG2CSTF2T
    chr11118657042118657183-5'-UTR,intron-Distal3.4454034.33286K562DDX3X
    chr11118625440118625592-CDS,intron-Distal4.802895.03175K562IGF2BP1
    chr11118633918118633973-CDS,intron-Distal,intron-Proximal3.176345.62120K562ZNF622
    chr11118651834118651953-CDS,intron-Distal,intron-Proximal4.1286211.89449K562AQR
    chr11118629443118629507-CDS,intron-Distal,intron-Proximal3.574296.95612HepG2PRPF8
    chr11118650327118650351-CDS,intron-Distal,intron-Proximal4.256607.16838HepG2BCLAF1
    chr11118638943118639030-CDS,intron-Distal4.196784.01763HepG2GRWD1
    chr11118651824118651906-CDS,intron-Distal,intron-Proximal3.371278.10957HepG2AQR
    chr11118627879118627931-CDS,intron-Distal,intron-Proximal3.539705.21950K562DDX24
    chr11118650303118650422-CDS,intron-Distal,intron-Proximal3.073688.02709K562GPKOW
    chr11118639013118639098-CDS,intron-Distal,intron-Proximal4.443075.16342K562SF3B4
    chr11118626971118627036-CDS,intron-Distal,intron-Proximal3.007053.55660K562BUD13
    chr11118638935118639014-CDS,intron-Distal3.730926.67313HepG2BCLAF1
    chr11118630622118630669-CDS,intron-Distal,intron-Proximal4.6059018.90589K562PRPF8
    chr11118627931118627997-CDS,intron-Distal,intron-Proximal3.324806.67395K562DDX24
    chr11118636045118636070-CDS,intron-Distal,intron-Proximal3.265503.39477K562BUD13
    chr11118629589118629653-CDS,intron-Distal,intron-Proximal3.434479.79645K562SF3B4
    chr11118650351118650394-CDS,intron-Distal4.176668.51432HepG2BCLAF1
    chr11118630612118630669-CDS,intron-Distal,intron-Proximal4.5885212.73354K562TIA1
    chr11118650337118650406-CDS,intron-Distal,intron-Proximal3.6384511.91514K562ZNF622
    chr11118630526118630654-CDS,intron-Distal,intron-Proximal3.8776620.19225K562EFTUD2
    chr11118633988118634051-CDS,intron-Distal,intron-Proximal4.0010710.89879K562AQR
    chr11118633966118634017-CDS,intron-Distal,intron-Proximal3.069484.02327K562LIN28B
    chr11118627879118627969-CDS,intron-Distal,intron-Proximal3.082405.00905HepG2BCLAF1
    chr11118630629118630675-CDS,intron-Distal,intron-Proximal3.457387.43517K562PUM2
    chr11118627879118627979-CDS,intron-Distal,intron-Proximal5.279598.11065K562IGF2BP1
    chr11118630579118630666-CDS,intron-Distal,intron-Proximal5.493448.11807HepG2PRPF8
    chr11118635788118635830-intron-Distal,intron-Proximal4.091953.12843K562PRPF8
    chr11118629434118629465-intron-Distal,intron-Proximal3.807386.42898K562AQR
    chr11118635825118635917-intron-Distal,intron-Proximal4.623637.92018K562AQR
    chr11118630569118630622-intron-Distal,intron-Proximal5.7014120.61418K562PRPF8
    chr11118630481118630534-intron-Distal,intron-Proximal3.466826.59733K562KHSRP
    chr11118657340118657433-intron-Distal3.169613.39857HepG2HNRNPM
    chr11118648539118648600-intron-Distal3.744123.24242HepG2HNRNPC
    chr11118626863118626945-intron-Distal,intron-Proximal4.097663.98488K562TIA1
    chr11118626021118626041-intron-Distal,intron-Proximal3.623365.98773K562KHSRP
    chr11118656661118656717-intron-Distal,intron-Proximal4.214508.79285K562AQR
    chr11118625982118626021-intron-Distal,intron-Proximal3.827803.45805K562KHSRP
    chr11118651915118651994-intron-Distal,intron-Proximal4.046343.02234K562KHSRP
    chr11118630534118630555-intron-Distal,intron-Proximal3.980215.98773K562KHSRP
    chr11118656753118656761-intron-Distal,intron-Proximal4.667368.01338K562AQR
    chr11118625703118625795-intron-Distal3.289834.56724K562KHSRP
    chr11118633504118633565-intron-Distal3.158493.53952HepG2KHSRP
    chr11118656717118656753-intron-Distal,intron-Proximal6.1458213.72936K562AQR
    chr11118633833118633887-intron-Distal,intron-Proximal3.729085.83621K562AQR
    chr11118639535118639541-intron-Distal4.0166812.64317K562XRCC6
    chr11118648005118648140-intron-Distal3.774755.63547HepG2HNRNPL
    chr11118633491118633593-intron-Distal4.1826715.79612K562KHSRP
    chr11118656676118656726-intron-Distal,intron-Proximal3.669675.24705K562BUD13
    chr11118625803118625884-intron-Distal3.106593.11628K562KHSRP
    chr11118633447118633491-intron-Distal3.542235.14864K562KHSRP
    chr11118633824118633891-intron-Distal,intron-Proximal3.465614.73009K562RBM22
    chr11118635593118635666-intron-Distal3.067873.73266K562KHSRP
    chr11118626041118626093-intron-Distal,intron-Proximal3.138555.57010K562KHSRP
    chr11118651906118651960-intron-Distal,intron-Proximal5.044294.28193HepG2AQR
    chr11118639482118639535-intron-Distal4.2154513.88065K562XRCC6
    chr11118661018118661137-intron-Distal,intron-Proximal3.087865.89614HepG2HNRNPM
    chr11118630568118630612-intron-Distal,intron-Proximal4.435444.48529K562TIA1
    chr11118656670118656757-intron-Distal,intron-Proximal4.7987610.02061K562PRPF8
    chr11118661761118661807-intron-Distal4.715045.32906HepG2AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein DDX6 and its RNA.



    Diffrential Expression

    • 8,683 differentially expressed genes after Knockdown/Knockout DDX6 protein.  





    • 88 RBPs can affect the levels of DDX6.  







    8,683 differentially expressed genes after Knockdown/Knockout DDX6 protein :

    Only display 100 entries as example. Please click "View All" button to see all 8,683 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    C1orf112ENSG00000000460.1278.02920264.32060-1.7602013.3847012.15000HepG2DDX6
    FUCA2ENSG00000001036.94442.762503475.334300.354202.508601.91850HepG2DDX6
    GCLCENSG00000001084.63370.724301521.585101.1474019.0874017.65920HepG2DDX6
    LAS1LENSG00000001497.12324.92570789.56360-1.2809015.2660013.97540HepG2DDX6
    SEMA3FENSG00000001617.7816.26930494.348500.723404.287303.53180HepG2DDX6
    ANKIB1ENSG00000001629.51640.276301147.775900.515004.069703.33290HepG2DDX6
    CYP51A1ENSG00000001630.116520.6310013253.26610-1.0233017.3708016.00070HepG2DDX6
    KRIT1ENSG00000001631.10360.47560638.87510-0.825606.550705.63190HepG2DDX6
    MYH16ENSG00000002079.836.901500.0000099999.9999010.442109.32530HepG2DDX6
    LASP1ENSG00000002834.138838.923306989.128000.338702.443901.86030HepG2DDX6
    SNX11ENSG00000002919.10686.10530485.946800.497502.982602.34340HepG2DDX6
    CYP26B1ENSG00000003137.416.254500.480605.079703.795503.08210HepG2DDX6
    DBNDD1ENSG00000003249.91530.87770705.101101.118407.191406.23500HepG2DDX6
    CFLARENSG00000003402.152392.942901912.248300.323402.025101.48910HepG2DDX6
    SLC7A2ENSG00000003989.129576.0251012927.56530-0.433003.826403.10980HepG2DDX6
    POLDIP2ENSG00000004142.71917.383202698.64580-0.493104.071603.33460HepG2DDX6
    PLXND1ENSG00000004399.85843.897301712.972801.7703027.9100026.25940HepG2DDX6
    AK2ENSG00000004455.125506.239003840.751800.519604.763703.97260HepG2DDX6
    FKBP4ENSG00000004478.52413.979001916.970200.332502.100401.55550HepG2DDX6
    KDM1AENSG00000004487.111920.132103367.50230-0.8105010.222209.11630HepG2DDX6
    CCDC132ENSG00000004766.11199.28240365.60400-0.875505.491204.64650HepG2DDX6
    NDUFAB1ENSG00000004779.51669.823502117.16690-0.342402.159401.60720HepG2DDX6
    ZMYND10ENSG00000004838.919.479804.491502.116602.013401.47900HepG2DDX6
    SLC25A13ENSG00000004864.91254.535901726.48800-0.460703.312102.64310HepG2DDX6
    ST7ENSG00000004866.14316.93920474.41230-0.581902.981002.34210HepG2DDX6
    CDC27ENSG00000004897.71426.999702600.84450-0.8660010.930809.79800HepG2DDX6
    PRSS22ENSG00000005001.517.255400.0000099999.999904.845404.04900HepG2DDX6
    SLC25A5ENSG00000005022.55365.625209966.53280-0.8933013.4812012.24520HepG2DDX6
    DHX33ENSG00000005100.8553.75290888.90880-0.682805.441704.60140HepG2DDX6
    LIG3ENSG00000005156.7520.31730725.37280-0.479302.845302.21960HepG2DDX6
    RPAP3ENSG00000005175.5380.86170552.12710-0.535702.934502.30000HepG2DDX6
    ACSM3ENSG00000005187.7503.264201526.80760-1.6011010.220809.11510HepG2DDX6
    AC004381.6ENSG00000005189.1583.86800258.71880-1.6252011.7248010.56060HepG2DDX6
    SPPL2BENSG00000005206.12668.45850384.497000.797805.407604.56980HepG2DDX6
    FAM214BENSG00000005238.15560.09090182.511601.6176019.0816017.65450HepG2DDX6
    GCFC2ENSG00000005436.9305.91170850.17590-1.4746020.1150018.65430HepG2DDX6
    WDR54ENSG00000005448.12618.90380203.394701.6053019.7434018.29320HepG2DDX6
    CROTENSG00000005469.7140.02660291.17090-1.056204.794104.00050HepG2DDX6
    RHBDD2ENSG00000005486.121654.48340805.042101.039108.352707.33410HepG2DDX6
    SOX8ENSG00000005513.966.241508.402902.978708.886407.84490HepG2DDX6
    ITGALENSG00000005844.1351.98870243.60330-2.2283017.8904016.50320HepG2DDX6
    PDK2ENSG00000005882.7313.04340688.19690-1.136509.714708.63320HepG2DDX6
    ITGA3ENSG00000005884.13141.4345013.408303.3988015.4453014.14570HepG2DDX6
    ZFXENSG00000005889.11549.176001732.98600-1.6579023.9797022.41470HepG2DDX6
    ITGA2BENSG00000005961.13176.8180053.500501.724509.772008.68700HepG2DDX6
    ASB4ENSG00000005981.8169.4408031.507102.4269015.4736014.17290HepG2DDX6
    CRLF1ENSG00000006016.615092.168503329.615602.1803018.6176017.20810HepG2DDX6
    TMEM98ENSG00000006042.72034.425802583.67310-0.344802.200801.64380HepG2DDX6
    TMEM132AENSG00000006118.101404.23110772.772100.861603.720803.01380HepG2DDX6
    SPATA20ENSG00000006282.151966.919901272.159800.628604.245403.49340HepG2DDX6
    TNFRSF12AENSG00000006327.93255.75610550.152702.5650078.3651075.84590HepG2DDX6
    MAP3K9ENSG00000006432.111114.82910414.562201.4271021.1010019.60820HepG2DDX6
    BAIAP2L1ENSG00000006453.91754.08540759.117201.2082018.2168016.81980HepG2DDX6
    JHDM1DENSG00000006459.63822.403401987.359700.943507.679806.69800HepG2DDX6
    AGKENSG00000006530.11322.83180564.97090-0.807406.001905.12070HepG2DDX6
    GGCTENSG00000006625.13312.80770536.18300-0.777405.580104.72970HepG2DDX6
    DBF4ENSG00000006634.3225.23070414.53030-0.880105.934105.05830HepG2DDX6
    TBXA2RENSG00000006638.718.256200.994404.198303.769003.05730HepG2DDX6
    IFRD1ENSG00000006652.92916.51890910.157401.6800037.3446035.46090HepG2DDX6
    GTF2IRD1ENSG00000006704.61176.21710702.070200.744406.907805.96630HepG2DDX6
    VPS41ENSG00000006715.11540.31420909.80820-0.751806.443005.53050HepG2DDX6
    ARSDENSG00000006756.11636.20810382.824200.732705.548304.70000HepG2DDX6
    PNPLA4ENSG00000006757.7221.48580342.20190-0.627603.038802.39390HepG2DDX6
    CCDC124ENSG00000007080.6393.57600227.426400.791104.220603.47030HepG2DDX6
    PAFAH1B1ENSG00000007168.82974.893702254.465200.400002.900202.26930HepG2DDX6
    CD79BENSG00000007312.812.640100.961303.716802.413001.83240HepG2DDX6
    PAX6ENSG00000007372.1677.307301.541405.6482017.9941016.60340HepG2DDX6
    RHBDF1ENSG00000007384.11524.13390110.613802.2443030.5268028.80730HepG2DDX6
    BAIAP3ENSG00000007516.9811.96890140.811102.5276024.9515023.36990HepG2DDX6
    CRAMP1LENSG00000007545.11852.47170662.856100.362901.907701.38590HepG2DDX6
    SELEENSG00000007908.117.469400.0000099999.999901.995401.46330HepG2DDX6
    E2F2ENSG00000007968.613.02920106.15600-3.0264013.3260012.09400HepG2DDX6
    SYN1ENSG00000008056.815.865400.0000099999.999904.430003.66270HepG2DDX6
    JARID2ENSG00000008083.9716.79940926.29800-0.369902.018901.48390HepG2DDX6
    NADKENSG00000008130.11929.607801799.07930-0.9526011.9820010.80440HepG2DDX6
    ADAM22ENSG00000008277.10118.52710223.44990-0.914703.554602.86240HepG2DDX6
    SYPL1ENSG00000008282.31447.060202061.79400-0.510804.196403.44760HepG2DDX6
    CELSR3ENSG00000008300.101223.00990771.545500.664503.256302.59190HepG2DDX6
    AASSENSG00000008311.10290.41500527.92900-0.862206.432305.52080HepG2DDX6
    PLEKHG6ENSG00000008323.11477.63320731.35500-0.614703.881403.15980HepG2DDX6
    MGST1ENSG00000008394.81261.623502495.41690-0.9840013.8342012.58470HepG2DDX6
    CRY1ENSG00000008405.7693.72320425.071000.706605.344504.51190HepG2DDX6
    ST3GAL1ENSG00000008513.101853.468002599.54840-0.488004.093203.35330HepG2DDX6
    PKD1ENSG00000008710.133090.61170886.185801.8021013.7805012.53240HepG2DDX6
    MAPK8IP2ENSG00000008735.10152.5745095.880000.670102.141901.59140HepG2DDX6
    RHOBTB2ENSG00000008853.12290.39710400.16010-0.462602.070001.52850HepG2DDX6
    RPS20ENSG00000008988.56347.4214013664.32060-1.1062020.6211019.14160HepG2DDX6
    CSDE1ENSG00000009307.117050.1663013834.37890-0.9725016.0703014.74330HepG2DDX6
    POMT2ENSG00000009830.7605.61110408.280800.568703.472102.78720HepG2DDX6
    VTA1ENSG00000009844.111081.148002209.99790-1.0315014.5296013.26060HepG2DDX6
    MLXIPLENSG00000009950.111015.052503082.12150-1.602405.032904.22140HepG2DDX6
    BAZ1BENSG00000009954.63450.167102762.606300.320502.086401.54330HepG2DDX6
    RANBP9ENSG00000010017.91382.579801769.87710-0.356302.261601.69760HepG2DDX6
    SPRTNENSG00000010072.1181.86630139.12130-0.765002.384701.80760HepG2DDX6
    ZNF207ENSG00000010244.122916.526203854.99420-0.402503.030402.38690HepG2DDX6
    UQCRC1ENSG00000010256.67527.892605678.758000.406603.220302.55910HepG2DDX6
    CD9ENSG00000010278.7892.37830482.748200.886308.584007.55490HepG2DDX6
    NCAPD2ENSG00000010292.81819.631103208.87210-0.8184010.246809.13900HepG2DDX6
    GIPRENSG00000010310.4271.6979049.406902.4591022.3949020.86470HepG2DDX6
    SEMA3GENSG00000010319.21636.24180880.734900.8935010.376209.26320HepG2DDX6
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    88 RBPs can affect the gene expression of DDX6 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DDX6ENSG00000110367.72083.206801808.262500.204102.407601.83360HepG2ACO1
    DDX6ENSG00000110367.72809.951902089.154700.427503.229002.65980HepG2AKAP1
    DDX6ENSG00000110367.7867.754301566.23370-0.851905.051503.78310HepG2BCCIP
    DDX6ENSG00000110367.72022.728102638.19660-0.383203.796603.10740HepG2BOP1
    DDX6ENSG00000110367.72009.803001642.322200.291201.999101.33470HepG2CIRBP
    DDX6ENSG00000110367.71579.750501807.97960-0.194702.257301.64730HepG2CKAP4
    DDX6ENSG00000110367.71233.531801598.79070-0.374204.600503.28900HepG2YBX3
    DDX6ENSG00000110367.7834.527101384.02790-0.729806.208205.23940HepG2DDX21
    DDX6ENSG00000110367.7399.957201718.94750-2.1036040.7364038.78470HepG2DDX6
    DDX6ENSG00000110367.71270.242001569.84720-0.305503.337002.56980HepG2DNAJC21
    DDX6ENSG00000110367.71126.568301556.05110-0.466009.457108.33730HepG2DNAJC2
    DDX6ENSG00000110367.72462.689101778.197100.469703.070302.34840HepG2EIF4B
    DDX6ENSG00000110367.73752.969202936.134800.354006.649905.78460HepG2ETF1
    DDX6ENSG00000110367.7663.795501012.05680-0.608507.693105.72200HepG2FAM120A
    DDX6ENSG00000110367.71377.543001020.768700.432304.237703.27540HepG2FUBP3
    DDX6ENSG00000110367.72100.161301709.453100.296901.875601.32230HepG2G3BP1
    DDX6ENSG00000110367.7759.594901008.34470-0.408703.033902.09350HepG2GEMIN5
    DDX6ENSG00000110367.72185.479402745.50730-0.329102.258301.67670HepG2GPKOW
    DDX6ENSG00000110367.71056.602101429.11530-0.435702.372001.34030HepG2GRSF1
    DDX6ENSG00000110367.71090.638401584.88750-0.539206.410305.48590HepG2HNRNPA1
    DDX6ENSG00000110367.71162.598001762.91630-0.600607.577706.47650HepG2HNRNPC
    DDX6ENSG00000110367.71513.605901765.10590-0.221802.833502.15320HepG2HNRNPL
    DDX6ENSG00000110367.71118.378401751.25930-0.6470015.1091013.78320HepG2HNRNPU
    DDX6ENSG00000110367.71840.314602208.32700-0.263002.333201.66600HepG2IGF2BP1
    DDX6ENSG00000110367.71362.560501788.84970-0.392708.013706.83330HepG2ILF2
    DDX6ENSG00000110367.71381.317701653.04720-0.259103.508602.36090HepG2KIF1C
    DDX6ENSG00000110367.7888.288901413.49540-0.670203.207002.02440HepG2NONO
    DDX6ENSG00000110367.71882.287802323.22510-0.303602.427201.72530HepG2NSUN2
    DDX6ENSG00000110367.71839.065001493.113300.300503.897103.20260HepG2PCBP1
    DDX6ENSG00000110367.72348.151001725.942600.444002.519001.52860HepG2PCBP2
    DDX6ENSG00000110367.71277.449701561.97950-0.290103.009202.24430HepG2PPIL4
    DDX6ENSG00000110367.72135.011001519.304400.490709.714308.81190HepG2PTBP1
    DDX6ENSG00000110367.71328.035401834.12140-0.465805.266904.47710HepG2PUF60
    DDX6ENSG00000110367.72646.493301946.974800.4427011.7340010.69100HepG2PUM1
    DDX6ENSG00000110367.72093.286901645.431900.347204.085303.34620HepG2QKI
    DDX6ENSG00000110367.72166.430201493.339900.536707.460306.39790HepG2RBM25
    DDX6ENSG00000110367.71098.909401438.54590-0.388502.303901.33850HepG2RCC2
    DDX6ENSG00000110367.72109.717001690.835100.319204.338603.68850HepG2NELFE
    DDX6ENSG00000110367.71909.586001574.791800.278002.644302.03980HepG2RECQL
    DDX6ENSG00000110367.71472.308001175.598400.324602.136701.43810HepG2RRP9
    DDX6ENSG00000110367.71250.774501559.56090-0.318303.441302.73690HepG2SAFB2
    DDX6ENSG00000110367.72341.372301581.781700.5657011.053809.99240HepG2SF3B4
    DDX6ENSG00000110367.73348.146002771.776900.272504.759604.15360HepG2SRFBP1
    DDX6ENSG00000110367.72675.573901651.041800.6964021.0440019.99630HepG2SRSF1
    DDX6ENSG00000110367.73632.672402790.496700.380402.286801.38640HepG2SRSF3
    DDX6ENSG00000110367.72355.588201810.896500.379306.332205.43850HepG2SRSF5
    DDX6ENSG00000110367.71959.390401343.214100.5446012.3545011.33500HepG2SRSF9
    DDX6ENSG00000110367.71946.280701484.032400.391105.199204.47070HepG2TAF15
    DDX6ENSG00000110367.72081.361202553.82850-0.295102.308001.63770HepG2TARDBP
    DDX6ENSG00000110367.7805.453801701.59330-1.0790026.9112025.64760HepG2TIAL1
    DDX6ENSG00000110367.71339.130901716.89270-0.358505.496404.75320HepG2TRIM56
    DDX6ENSG00000110367.71266.491001791.81640-0.500606.384504.97130HepG2TUFM
    DDX6ENSG00000110367.72530.452401758.505500.524906.145305.22620HepG2U2AF1
    DDX6ENSG00000110367.7509.11870905.71220-0.831105.073004.03790HepG2UCHL5
    DDX6ENSG00000110367.71270.651102260.92330-0.8313028.0021026.25520HepG2UPF1
    DDX6ENSG00000110367.7673.055801404.18210-1.060907.395905.69730HepG2UPF2
    DDX6ENSG00000110367.71904.034702323.92680-0.287503.788502.58070HepG2UTP18
    DDX6ENSG00000110367.71010.978801388.07280-0.457302.749101.65740HepG2XPO5
    DDX6ENSG00000110367.7688.345501509.09960-1.132509.321808.01250HepG2XRN2
    DDX6ENSG00000110367.72268.512401743.557000.379607.735406.70430HepG2ZC3H8
    DDX6ENSG00000110367.71829.112502486.58540-0.4430011.4503010.52440HepG2ZNF622
    DDX6ENSG00000110367.72212.685102715.33590-0.295302.218501.44380K562BOP1
    DDX6ENSG00000110367.73329.407804149.00160-0.317502.742901.46750K562CIRBP
    DDX6ENSG00000110367.74066.883505351.52420-0.396007.702305.83420K562CPEB4
    DDX6ENSG00000110367.71936.415002366.08970-0.289103.853002.26120K562DDX27
    DDX6ENSG00000110367.72562.016503180.69450-0.312102.666001.64170K562DDX3X
    DDX6ENSG00000110367.74312.642805537.01450-0.360507.485806.48460K562DDX47
    DDX6ENSG00000110367.71208.364703224.88760-1.4162023.7783020.01700K562DDX6
    DDX6ENSG00000110367.72005.571702839.36060-0.501609.497908.02360K562EIF3G
    DDX6ENSG00000110367.72645.746804078.11970-0.624207.198905.77070K562FIP1L1
    DDX6ENSG00000110367.72430.561502937.66180-0.273402.079901.33390K562FMR1
    DDX6ENSG00000110367.72619.679404267.05980-0.7039014.0387012.31200K562GRSF1
    DDX6ENSG00000110367.71632.311302676.42410-0.713408.904207.88400K562HNRNPC
    DDX6ENSG00000110367.72620.588203354.10440-0.356002.729601.80600K562HNRNPM
    DDX6ENSG00000110367.73336.892205529.35530-0.728608.610307.22650K562HSPD1
    DDX6ENSG00000110367.73047.204903869.57750-0.344702.334601.41500K562IGF2BP2
    DDX6ENSG00000110367.73189.743403936.55040-0.303502.720601.54090K562IGF2BP3
    DDX6ENSG00000110367.75127.771004224.361300.279502.512501.72920K562KIF1C
    DDX6ENSG00000110367.72185.985002690.66270-0.299702.778401.89970K562METAP2
    DDX6ENSG00000110367.72944.549403995.25950-0.4402011.096809.59490K562MTPAP
    DDX6ENSG00000110367.73838.673604439.14960-0.209704.517803.59250K562NSUN2
    DDX6ENSG00000110367.71944.000502634.61590-0.438604.032402.15940K562NUSAP1
    DDX6ENSG00000110367.71967.721003477.00900-0.821304.703303.31820K562PABPN1
    DDX6ENSG00000110367.72788.318504629.17360-0.731408.702307.04610K562PPIG
    DDX6ENSG00000110367.71623.537702399.58970-0.563605.521304.17990K562PSIP1
    DDX6ENSG00000110367.73180.690903952.60290-0.313502.748602.08650K562PTBP1
    DDX6ENSG00000110367.75354.226406871.80400-0.360006.563105.06770K562PUM2
    DDX6ENSG00000110367.74634.169903846.385900.268703.519802.86420K562RBM15
    DDX6ENSG00000110367.71517.390502188.80930-0.528606.577605.04870K562RCC2
    DDX6ENSG00000110367.71646.278702615.27900-0.667803.271302.38070K562RPS19
    DDX6ENSG00000110367.72292.978603494.56260-0.607907.662905.88710K562RPS3
    DDX6ENSG00000110367.73192.969104380.22230-0.456109.349907.91560K562SF3A3
    DDX6ENSG00000110367.71247.967402074.98500-0.733504.774803.31600K562SRFBP1
    DDX6ENSG00000110367.72592.430303373.83940-0.380104.539303.13450K562SRSF4
    DDX6ENSG00000110367.72835.209603658.88920-0.368003.146302.01390K562SRSF5
    DDX6ENSG00000110367.73097.955403921.83120-0.340202.228401.58890K562TARDBP
    DDX6ENSG00000110367.72677.754703782.94440-0.498505.513904.29490K562TIA1
    DDX6ENSG00000110367.71609.142302308.06520-0.520405.100103.79110K562TIAL1
    DDX6ENSG00000110367.72961.942203711.25020-0.325402.906601.78170K562TRA2A
    DDX6ENSG00000110367.71941.748802451.45680-0.336302.867101.90100K562TRIM56
    DDX6ENSG00000110367.74482.350403665.315600.290203.350102.46870K562U2AF2
    DDX6ENSG00000110367.76026.878207434.14450-0.302803.144701.64340K562UBE2L3
    DDX6ENSG00000110367.72589.728604706.91990-0.8620040.3683038.03250K562UPF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    705 alternative splicing events after Knockdown/Knockout DDX6 protein :

    Only display 100 entries as example. Please click "View All" button to see all 705 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEYWHAZENSG00000164924.13chr8-1019641561019643561019608411019611281019654961019656160.140000.000040.00704includedHepG2DDX6
    SEKTN1ENSG00000126777.13chr14+5613067256130759561282395612833056133958561340480.109000.001300.09171includedHepG2DDX6
    SECFBENSG00000243649.4chr6+3189573131895941318954743189557531901386319015600.067000.000100.01355includedHepG2DDX6
    SELUC7L3ENSG00000108848.11chr17+4882657948826705488239024882406348827861488282080.076000.000000.00001includedHepG2DDX6
    SELUC7L3ENSG00000108848.11chr17+4881464748814840488143204881438748817666488177060.172000.000290.03040includedHepG2DDX6
    SEASXL1ENSG00000171456.12chr20+3095958030959677309568173095692630959966309600410.299000.001420.09707includedHepG2DDX6
    SEUSMG5ENSG00000173915.8chr10-1051555021051557891051521271051522231051561651051561980.127000.000000.00000includedHepG2DDX6
    SECNEP1R1ENSG00000205423.7chr16+5005956150059612500583205005925150060306500603780.268000.000460.04193includedHepG2DDX6
    SETIMM8BENSG00000150779.7chr11-1119567011119570341119555231119561861119573631119575220.321000.000150.01840includedHepG2DDX6
    SEDHX9ENSG00000135829.12chr1+1828247111828248481828231751828233131828256661828257070.130000.000000.00001includedHepG2DDX6
    SETBC1D17ENSG00000104946.6chr19+5038266250382761503817545038182950383535503836590.166000.000020.00413includedHepG2DDX6
    SEC1orf43ENSG00000143612.14chr1-1541923111541924131541869321541870501541928171541930820.166000.000000.00002includedHepG2DDX6
    SEPKP4ENSG00000144283.17chr2+1595256621595258141595229241595230751595262311595264270.089000.000000.00091includedHepG2DDX6
    SES100A16ENSG00000188643.6chr1-1535813741535815061535804741535806531535816531535818130.215000.000000.00000includedHepG2DDX6
    SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733692620.227000.000000.00069includedHepG2DDX6
    SETMEM222ENSG00000186501.10chr1+2765747527657628276572102765729527658560276585920.264000.000100.01417includedHepG2DDX6
    SEALDOAENSG00000149925.12chr16+3007719630077248300757443007582630078554300786870.171000.000000.00000includedHepG2DDX6
    SEIL17RBENSG00000056736.5chr3+5389244253892637538916515389171753892745538928450.211000.000010.00168includedHepG2DDX6
    SEPI4KAP2ENSG00000183506.12chr22-2183093221831053218302802183044921832078218322040.268000.000130.01710includedHepG2DDX6
    SETPM1ENSG00000140416.15chr15+6335391163353987633533966335347263354413633544760.115000.000000.00003includedHepG2DDX6
    SEGPR56ENSG00000205336.7chr16+5767550257675620576539565765404857684164576842630.405000.000980.07434includedHepG2DDX6
    SENT5C2ENSG00000076685.14chr10-1048604191048607001048596821048597761048608011048608590.059000.001440.09758includedHepG2DDX6
    SEPCNPENSG00000081154.7chr3+1012986851012988481012930331012931231013090581013091140.135000.000490.04383includedHepG2DDX6
    SEAPOA2ENSG00000158874.7chr1-1611931701611932151611927071611928401611933841611934210.179000.000520.04554includedHepG2DDX6
    SENQO2ENSG00000124588.15chr6+3004728300488530002223000319300670130067930.340000.000740.06106includedHepG2DDX6
    SEPABPC1LENSG00000101104.8chr20+4356670143566832435652774356537143586977435874480.141000.001380.09477includedHepG2DDX6
    SEAPOC1ENSG00000130208.5chr19+4541792845418031454175034541774645418128454182060.132000.000000.00000includedHepG2DDX6
    SEMETTL6ENSG00000206562.7chr3-1545700415457090154555271545566915457278154574490.361000.000090.01346includedHepG2DDX6
    SEVPS36ENSG00000136100.8chr13-5300337053003567530013215300135453007796530078830.182000.000140.01758includedHepG2DDX6
    SEMRPL20ENSG00000242485.1chr1-1337738133798113372921337636134118813412660.163000.000000.00005includedHepG2DDX6
    SEC6orf48ENSG00000204387.8chr6+3180420031804294318031873180322831805012318052120.202000.000000.00002includedHepG2DDX6
    SEMOV10ENSG00000155363.14chr1+1132420791132422341132413361132414111132423061132423830.257000.000000.00000includedHepG2DDX6
    SEWNK1ENSG00000060237.12chr12+9887389891979873779875279898869901650.261000.000270.02925includedHepG2DDX6
    SEBAG6ENSG00000204463.8chr6-3161208331612191316118583161197131612301316123790.134000.000030.00598includedHepG2DDX6
    SEBAG6ENSG00000204463.8chr6-3160727631607423316068043160700331607975316080830.178000.000000.00003includedHepG2DDX6
    SEIST1ENSG00000182149.16chr16+7195719071957283719563767195658371958671719587200.056000.000150.01871includedHepG2DDX6
    SEDEDD2ENSG00000160570.9chr19-4272083142721197427193794271940442721783427218340.299000.000440.04117includedHepG2DDX6
    SETWF1ENSG00000151239.9chr12-4419797844198043441960884419626744198297441983750.067000.000100.01358includedHepG2DDX6
    SEQRSL1ENSG00000130348.7chr6+1070879751070880811070774731070775801070882231070883830.138000.000040.00735includedHepG2DDX6
    SESUCOENSG00000094975.9chr1+1725466781725466991725446571725447631725469031725469590.332000.000030.00585includedHepG2DDX6
    SEDPP9ENSG00000142002.12chr19-4683201468333646827074682850468348846836410.095000.000080.01207includedHepG2DDX6
    SEA1CFENSG00000148584.10chr10-5261042452610567526037475260388252619601526197450.121000.000020.00424includedHepG2DDX6
    SEANKHD1ENSG00000131503.16chr5+1398518231398518801398442511398443611398621641398622520.286000.000020.00364includedHepG2DDX6
    SEPLXNA3ENSG00000130827.5chrX+1536992241536993521536987841536989541536994471536996600.211000.000460.04193includedHepG2DDX6
    SESDHAP1ENSG00000185485.10chr3-1956871701956872941956866181956869571956901701956902920.868000.000120.01607includedHepG2DDX6
    SEUSP3ENSG00000140455.12chr15+6382121263821365637968106379702963824845638249060.232000.000390.03727includedHepG2DDX6
    SESAT1ENSG00000130066.12chrX+2380241023802520238019162380200023803444238035460.077000.000000.00000includedHepG2DDX6
    SEWARSENSG00000140105.13chr14-1008416191008417431008354231008355951008425961008426460.242000.000060.00919includedHepG2DDX6
    SESTX16ENSG00000124222.17chr20+5724621957246353572455675724565957248686572487670.087000.001450.09803includedHepG2DDX6
    SEPLD3ENSG00000105223.14chr19+4087145940871837408545964085467540872325408724170.192000.000000.00043includedHepG2DDX6
    SEHDHD2ENSG00000167220.7chr18-4466360544663667446627094466282044676748446768470.375000.000000.00078includedHepG2DDX6
    SESNHG8ENSG00000269893.2chr4+1192000981192002921191999121191999471192005431192005860.418000.000000.00000includedHepG2DDX6
    SEMANBALENSG00000101363.8chr20+3592569835925937359180653591808935927165359272820.353000.000110.01535includedHepG2DDX6
    SEARHGEF10LENSG00000074964.12chr1+1796104217961057179588151795896117961329179615110.175000.000310.03216includedHepG2DDX6
    SENFYCENSG00000066136.15chr1+4123258941232646412322674123237541235027412350870.198000.000210.02358includedHepG2DDX6
    SERNPEPL1ENSG00000142327.7chr2+2415131912415133082415125442415126782415135292415137650.098000.000170.02061includedHepG2DDX6
    SECASC4ENSG00000166734.14chr15+4469508444695252446730034467317444705533447079560.187000.000070.01001includedHepG2DDX6
    SECBSENSG00000160200.13chr21-4447709344477233444769124447699744478254444783630.065000.000170.02061includedHepG2DDX6
    SETBC1D23ENSG00000036054.8chr3+1000306761000307211000292461000293861000349421000350310.165000.001200.08591includedHepG2DDX6
    SEMTA1ENSG00000182979.13chr14+1059330431059330791059316701059329151059358031059358350.131000.000000.00125includedHepG2DDX6
    SECOX20ENSG00000203667.5chr1+2450052452450053602449986232449990582450054962450055600.082000.000010.00149includedHepG2DDX6
    SETAF15ENSG00000172660.7chr17+3413697534137067341364873413658034144719341447590.058000.000000.00106includedHepG2DDX6
    SEAC093838.4ENSG00000152117.13chr2+1322773861322775151322771071322772391322776691322779940.255000.000970.07340includedHepG2DDX6
    SEOSMRENSG00000145623.8chr5+3891930838919436389189413891916438921716389218960.089000.000000.00015includedHepG2DDX6
    SETBCBENSG00000105254.7chr19+3661297836613075366124283661262036616352366164250.054000.000880.06787includedHepG2DDX6
    SEKHKENSG00000138030.8chr2+2731734427317479273151992731531627317667273178020.134000.000270.02878includedHepG2DDX6
    SEZNF614ENSG00000142556.14chr19-5252082852520950525202535252061252521260525213560.402000.000000.00002includedHepG2DDX6
    SENASPENSG00000132780.12chr1+4607299246074009460721534607226346078840460789200.128000.001210.08689includedHepG2DDX6
    SENUDT2ENSG00000164978.13chr9+3433622634336339343295033432959734338710343388450.215000.000960.07286includedHepG2DDX6
    SECRYZENSG00000116791.9chr1-7517278675172888751725827517267875175781751759310.134000.000060.00943includedHepG2DDX6
    SEWBP5ENSG00000185222.7chrX+1026120101026120891026113721026115341026125421026133970.157000.000000.00030includedHepG2DDX6
    SEMMABENSG00000139428.7chr12-1099990471099991341099988441099989091099992241099993220.343000.000130.01673includedHepG2DDX6
    SEACSS2ENSG00000131069.15chr20+3350976533509795335094503350966933511125335112340.053000.000870.06750includedHepG2DDX6
    SESLCO4A1ENSG00000101187.11chr20+6129936361299536612990966129926261299828612999560.191000.000000.00001includedHepG2DDX6
    SESDHAF2ENSG00000167985.2chr11+6120423261204432611975136119765461205096612053200.067000.001470.09907includedHepG2DDX6
    SEPDE8AENSG00000073417.10chr15+8563394885634146856325688563264785634274856344120.163000.000570.04931includedHepG2DDX6
    SESPAG4ENSG00000061656.5chr20+3420600834206052342057003420576234206371342063970.126000.000020.00469includedHepG2DDX6
    SEABCC2ENSG00000023839.6chr10+1015768201015769531015727741015729011015770641015772410.142000.000060.00943includedHepG2DDX6
    SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.071000.000000.00010includedHepG2DDX6
    SEHNMTENSG00000150540.9chr2+1387598531387599131387596331387597641387627011387627950.103000.000000.00031includedHepG2DDX6
    SEHNMTENSG00000150540.9chr2+1387246661387249561387220481387221981387277341387277870.238000.000000.00000includedHepG2DDX6
    SENTAN1ENSG00000157045.4chr16-1514193415141956151417111514177715149747151498960.419000.001270.08947includedHepG2DDX6
    SEZNF496ENSG00000162714.8chr1-2474727402474728812474717762474718902474730002474731080.066000.001220.08746includedHepG2DDX6
    SEMAZENSG00000103495.9chr16+2982086029821085298198902982006229821397298224850.229000.000000.00000includedHepG2DDX6
    SECD3DENSG00000167286.5chr11-1182104891182106211182101651182102091182110891182113080.290000.000040.00720includedHepG2DDX6
    SEWSB1ENSG00000109046.10chr17+2563476925634945256338072563390825636125256362980.298000.000000.00000includedHepG2DDX6
    SEHNRNPDLENSG00000152795.13chr4-8334671583346820833457818334603683347189833472820.242000.000000.00000includedHepG2DDX6
    SEAXIN2ENSG00000168646.8chr17-6353298663533181635324376353267163533441635339530.284000.000020.00329includedHepG2DDX6
    SEPAHENSG00000171759.4chr12-1032374061032375571032341771032342931032381131032382270.058000.000310.03200includedHepG2DDX6
    SEPCID2ENSG00000126226.17chr13-1138381161138383421138354431138355441138386591138388010.120000.000010.00250includedHepG2DDX6
    SEFGFR1ENSG00000077782.15chr8-3828676438286908382858633828595338287199382874660.261000.000040.00643includedHepG2DDX6
    SEDHRS2ENSG00000100867.10chr14+2410948324109640241090022410910424110874241124280.079000.000210.02358includedHepG2DDX6
    SEMBNL3ENSG00000076770.10chrX-1315186901315187261315162051315163001315206881315208390.060000.000060.00943includedHepG2DDX6
    SEMFN2ENSG00000116688.12chr1+1206381412063946120620381206216012064048120641750.091000.000050.00855includedHepG2DDX6
    SEPTPRSENSG00000105426.10chr19-5218797521880952184305218543521932052194780.155000.001160.08423includedHepG2DDX6
    SEITIH3ENSG00000162267.8chr3+5283927752839388528380185283875052840118528401540.063000.000260.02836includedHepG2DDX6
    SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.442000.000060.00943includedHepG2DDX6
    SESLC37A4ENSG00000137700.12chr11-1188973121188973981188966761188967901188976461188978050.400000.000000.00000includedHepG2DDX6
    SEFDPSENSG00000160752.10chr1+1552795791552797561552787061552788671552798331552799960.186000.000000.00017includedHepG2DDX6
    SEYPEL5ENSG00000119801.8chr2+3037111030371407303698283036992830379493303796580.104000.000100.01404includedHepG2DDX6





    3 RBPs can affect the splicing of DDX6 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEDDX6ENSG00000110367.7chr11-118629482118629611118627879118627996118630630118630753-0.086000.000000.00000excludedK562AQR
    SEDDX6ENSG00000110367.7chr11-118635916118636063118633920118634015118638930118639060-0.062000.001430.01646excludedK562AQR
    SEDDX6ENSG00000110367.7chr11-118629482118629611118627879118627996118630630118630753-0.053000.000020.00169excludedK562TARDBP
    A3SSDDX6ENSG00000110367.7chr11-1186518291186519561186518291186518931186567601186572270.054000.000020.00018longerK562AQR
    MXEDDX6ENSG00000110367.7chr11-1186294821186296111186306301186307531186278791186279961186339201186340150.135000.002280.055841includedHepG2MATR3
    MXEDDX6ENSG00000110367.7chr11-1186359161186360631186389301186390911186339201186340151186503401186504450.080000.000200.002221includedK562AQR
    MXEDDX6ENSG00000110367.7chr11-1186359161186360631186389301186391551186339201186340151186503401186504450.071000.000620.005971includedK562AQR
    MXEDDX6ENSG00000110367.7chr11-118630630118630753118633920118634015118627879118627996118635916118636063-0.121000.000000.000002includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein DDX6 and its RNA.