ABCA2

General Information

Gene Name : ABCA2
Gene ID : ENSG00000107331.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ABCA2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ABCA2	ENSG00000107331.16	0.05	0.23	0.14	ENCSR000AEF
HepG2	ABCA2	ENSG00000107331.16	32.22	5.06	18.64	ENCSR985KAT
K562	ABCA2	ENSG00000107331.16	7.12	4.13	5.62	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ABCA2 is not avaliable on ENCORE database.

Proteins bound to RNA

ABCA2 RNA is bound by 29 proteins.

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eCLIP assay for ABCA2 is not avaliable on ENCORE database.

29 proteins are bound to ABCA2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	139904798	139904894	-	3'-UTR,CDS,intron-Distal,intron-Proximal	8.05484	59.27516	K562	RBFOX2
chr9	139904751	139904897	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.04365	31.92729	K562	DDX24
chr9	139904744	139904878	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.00089	30.46358	K562	AQR
chr9	139904721	139904890	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.50529	29.23215	K562	PRPF8
chr9	139904815	139904914	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.28958	25.92385	HepG2	RBFOX2
chr9	139904758	139904888	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.71706	21.30380	HepG2	PRPF8
chr9	139912877	139913003	-	intron-Distal,intron-Proximal	6.47591	19.32881	HepG2	DDX59
chr9	139904914	139904986	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.15374	18.97588	HepG2	RBFOX2
chr9	139904794	139904897	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.57028	16.87433	HepG2	AQR
chr9	139904935	139905013	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.98585	16.81409	K562	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 84 entries

eCLIP assay for ABCA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ABCA2 is not available on ENCORE database.
132 RBPs can affect the levels of ABCA2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ABCA2 is not available on ENCORE database.

132 RBPs can affect the gene expression of ABCA2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ABCA2	ENSG00000107331.12	187.33240	1422.25940	-2.92450	119.58700	117.23110	HepG2	RBM22
ABCA2	ENSG00000107331.12	215.96360	1212.41540	-2.48900	100.71650	97.52200	K562	FXR1
ABCA2	ENSG00000107331.12	2074.16550	603.08930	1.78200	96.51580	93.81850	HepG2	TRIM56
ABCA2	ENSG00000107331.12	243.45870	1104.28040	-2.18140	80.26800	78.52290	HepG2	SRSF1
ABCA2	ENSG00000107331.12	507.74960	1394.62490	-1.45770	54.70680	53.14230	HepG2	SSB
ABCA2	ENSG00000107331.12	1769.86910	825.05140	1.10100	44.92400	42.80730	HepG2	SLBP
ABCA2	ENSG00000107331.12	1706.11440	827.97920	1.04290	41.09090	38.86790	HepG2	HNRNPL
ABCA2	ENSG00000107331.12	2390.89540	1320.65760	0.85620	36.41730	35.01880	HepG2	ZNF622
ABCA2	ENSG00000107331.12	714.29560	1437.68140	-1.00920	31.80610	30.28370	HepG2	ACO1
ABCA2	ENSG00000107331.12	1230.05050	561.82460	1.13040	31.02360	28.02630	K562	BCLAF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 158 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ABCA2 is not available on ENCORE database.

8 RBPs can affect the splicing of ABCA2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	ABCA2	ENSG00000107331.12	chr9	-	139905858	139906201	139905858	139906006	139906085	139906201	-0.05200	0.00001	0.00540	excluded	HepG2	RBM15
RI	ABCA2	ENSG00000107331.12	chr9	-	139917392	139918292	139917392	139917504	139918289	139918292	0.65700	0.00001	0.00044	included	HepG2	PCBP1
RI	ABCA2	ENSG00000107331.12	chr9	-	139917392	139918292	139917392	139917504	139918289	139918292	0.22600	0.00171	0.01776	included	K562	AKAP8L
RI	ABCA2	ENSG00000107331.12	chr9	-	139917392	139918292	139917392	139917504	139918289	139918292	0.59900	0.00250	0.07164	included	K562	TARDBP
RI	ABCA2	ENSG00000107331.12	chr9	-	139905858	139906201	139905858	139906006	139906085	139906201	0.18500	0.00254	0.04869	included	K562	RBM22
SE	ABCA2	ENSG00000107331.12	chr9	-	139918289	139918292	139917392	139917504	139918594	139918688	-0.73200	0.00266	0.09918	excluded	HepG2	PCBP1
RI	ABCA2	ENSG00000107331.12	chr9	-	139904644	139905189	139904644	139904823	139905071	139905189	-0.17000	0.00330	0.03142	excluded	HepG2	TAF15
RI	ABCA2	ENSG00000107331.12	chr9	-	139917392	139918292	139917392	139917504	139918289	139918292	0.39300	0.00558	0.03854	included	HepG2	SF3B4
RI	ABCA2	ENSG00000107331.12	chr9	-	139905424	139905761	139905424	139905557	139905637	139905761	0.14300	0.00647	0.09200	included	HepG2	IGF2BP3

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ABCA2

General Information

Functions

Localization

Domains (AlphaFold: ABCA2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ABCA2 is not avaliable on ENCORE database.

29 proteins are bound to ABCA2 RNA:

eCLIP assay for ABCA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ABCA2 is not available on ENCORE database.

132 RBPs can affect the gene expression of ABCA2 :

The Knockdown/knockout RNA-Seq assay for ABCA2 is not available on ENCORE database.

8 RBPs can affect the splicing of ABCA2 :

The Knockdown/knockout RNA-Seq assay for ABCA2 is not avaliable on ENCORE database.