TAMM41

General Information

Gene Name : TAMM41
Gene ID : ENSG00000144559.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TAMM41)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TAMM41	ENSG00000144559.10	12.45	10.51	11.48	ENCSR000AEF
HepG2	TAMM41	ENSG00000144559.10	9.48	13.71	11.60	ENCSR985KAT
K562	TAMM41	ENSG00000144559.10	23.44	21.05	22.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

Proteins bound to RNA

TAMM41 RNA is bound by 20 proteins.

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

20 proteins are bound to TAMM41 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	11858720	11858777	-	3'-UTR,CDS,intron-Distal	4.14436	3.53690	K562	ZNF622
chr3	11850970	11851101	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.82413	3.45590	K562	GRWD1
chr3	11850984	11851078	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.54232	8.19964	HepG2	BCLAF1
chr3	11880640	11880697	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.53867	4.98672	K562	AQR
chr3	11848821	11848908	-	3'-UTR,CDS,intron-Distal	4.76321	4.66737	HepG2	MATR3
chr3	11849251	11849352	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.47619	8.72621	HepG2	PRPF8
chr3	11858660	11858761	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.22039	5.00751	HepG2	BCLAF1
chr3	11832009	11832075	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.33993	3.70678	K562	BUD13
chr3	11880600	11880712	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81176	3.88924	K562	PRPF8
chr3	11850852	11850914	-	3'-UTR,intron-Distal,intron-Proximal	3.12593	5.40388	HepG2	U2AF2
chr3	11849286	11849375	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.30841	3.05161	HepG2	PPIG
chr3	11849314	11849401	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.14942	10.00445	HepG2	U2AF2
chr3	11851065	11851162	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.28201	5.17903	K562	UCHL5
chr3	11832016	11832071	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.06982	7.27507	HepG2	U2AF2
chr3	11888116	11888251	-	5'-UTR,intron-Distal,intron-Proximal	3.42138	9.15475	HepG2	PCBP2
chr3	11888180	11888262	-	5'-UTR,intron-Distal,intron-Proximal	4.39524	5.33511	HepG2	HNRNPK
chr3	11888088	11888223	-	5'-UTR,CDS,intron-Distal	4.06330	10.51255	K562	PCBP1
chr3	11888085	11888196	-	5'-UTR,CDS,intron-Distal	3.09415	6.07287	K562	HNRNPK
chr3	11887972	11888079	-	CDS,intron-Distal	3.66214	7.26626	HepG2	PPIG
chr3	11851162	11851211	-	intron-Distal,intron-Proximal	4.86965	5.13952	K562	SF3B4
chr3	11844162	11844227	-	intron-Distal	4.16798	3.89080	K562	EXOSC5
chr3	11838916	11838950	-	intron-Distal	4.01499	3.30687	K562	EXOSC5
chr3	11856394	11856444	-	intron-Distal	3.37584	3.45178	K562	MATR3
chr3	11834525	11834537	-	intron-Distal	3.33324	3.25288	HepG2	HNRNPC
chr3	11844035	11844094	-	intron-Distal	3.29946	3.91859	HepG2	SUGP2
chr3	11843994	11844084	-	intron-Distal	3.29700	5.20425	HepG2	MATR3
chr3	11842191	11842294	-	intron-Distal	3.17374	4.10408	K562	KHSRP
chr3	11848660	11848706	-	intron-Distal,intron-Proximal	3.94683	3.54208	HepG2	SUGP2
chr3	11847881	11848010	-	intron-Distal	4.98337	5.81225	K562	PTBP1
chr3	11856400	11856448	-	intron-Distal	3.52671	5.42643	HepG2	MATR3
chr3	11844166	11844226	-	intron-Distal	3.21525	4.46039	HepG2	MATR3
chr3	11855713	11855796	-	intron-Distal	4.18635	3.78533	HepG2	PTBP1
chr3	11838331	11838406	-	intron-Distal	4.21697	3.97018	HepG2	HNRNPM
chr3	11838195	11838252	-	intron-Distal	4.55357	4.48623	K562	EXOSC5
chr3	11838008	11838058	-	intron-Distal	4.34605	4.48560	K562	EXOSC5
chr3	11855948	11855987	-	intron-Distal	4.76157	4.40618	K562	PTBP1
chr3	11834487	11834525	-	intron-Distal	3.42798	3.64839	HepG2	HNRNPC
chr3	11847959	11848035	-	intron-Distal	4.33334	4.52538	HepG2	PTBP1
chr3	11832797	11832863	-	intron-Distal	4.02859	6.02363	HepG2	U2AF2
chr3	11841514	11841615	-	intron-Distal	4.39932	3.27946	HepG2	HNRNPM
chr3	11885407	11885501	-	intron-Distal,intron-Proximal	4.42816	4.21433	K562	PRPF8
chr3	11855725	11855788	-	intron-Distal	4.57303	4.67693	K562	PTBP1
chr3	11844160	11844226	-	intron-Distal	3.70603	5.28337	HepG2	HNRNPM
chr3	11841564	11841615	-	intron-Distal	4.43276	5.35792	HepG2	SUGP2
chr3	11841188	11841265	-	intron-Distal	3.22480	4.53157	HepG2	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TAMM41 is not available on ENCORE database.
28 RBPs can affect the levels of TAMM41.

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

28 RBPs can affect the gene expression of TAMM41 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TAMM41	ENSG00000144559.6	111.76170	175.41790	-0.65040	2.17150	1.61780	HepG2	DDX6
TAMM41	ENSG00000144559.6	197.32060	125.72010	0.65020	2.75020	1.96720	HepG2	FUBP3
TAMM41	ENSG00000144559.6	263.74020	188.02160	0.48810	1.91960	1.33920	HepG2	FXR1
TAMM41	ENSG00000144559.6	249.75030	176.66920	0.49930	1.95130	1.35790	HepG2	HNRNPK
TAMM41	ENSG00000144559.6	162.77140	223.23170	-0.45570	1.92770	1.31510	HepG2	IGF2BP1
TAMM41	ENSG00000144559.6	241.71290	165.44610	0.54680	2.50960	1.86420	HepG2	RBM25
TAMM41	ENSG00000144559.6	281.79620	175.24390	0.68520	4.26870	3.55870	HepG2	SF3B4
TAMM41	ENSG00000144559.6	401.15460	309.37040	0.37470	2.30800	1.83690	HepG2	SRFBP1
TAMM41	ENSG00000144559.6	243.94030	182.91790	0.41520	1.70860	1.31170	HepG2	SRSF1
TAMM41	ENSG00000144559.6	394.76650	202.98410	0.95950	7.08710	6.09120	HepG2	U2AF1
TAMM41	ENSG00000144559.6	395.24380	203.63360	0.95670	2.42580	1.50920	HepG2	U2AF2
TAMM41	ENSG00000144559.6	171.23260	247.01510	-0.52860	2.82800	2.12210	HepG2	UPF1
TAMM41	ENSG00000144559.6	611.75440	433.33290	0.49740	4.64140	3.93980	K562	AGGF1
TAMM41	ENSG00000144559.6	266.53820	434.13710	-0.70380	5.74160	4.61890	K562	CPSF6
TAMM41	ENSG00000144559.6	766.45730	626.15030	0.29160	2.32980	1.72340	K562	DDX47
TAMM41	ENSG00000144559.6	329.93780	453.90260	-0.46020	3.43860	2.65030	K562	EIF2S2
TAMM41	ENSG00000144559.6	310.34480	441.72600	-0.50930	3.02910	2.13160	K562	FMR1
TAMM41	ENSG00000144559.6	274.25070	393.22050	-0.51980	3.11590	2.48740	K562	HNRNPC
TAMM41	ENSG00000144559.6	390.02510	565.87030	-0.53690	4.28700	2.94100	K562	HNRNPL
TAMM41	ENSG00000144559.6	773.82200	513.74480	0.59080	6.80060	5.39610	K562	HNRNPU
TAMM41	ENSG00000144559.6	209.25180	373.21560	-0.83480	3.56350	2.50230	K562	MATR3
TAMM41	ENSG00000144559.6	674.14420	536.06820	0.33050	2.11130	1.33290	K562	MBNL1
TAMM41	ENSG00000144559.6	403.11310	286.27280	0.49370	2.53610	1.81770	K562	PRPF8
TAMM41	ENSG00000144559.6	583.23970	447.18410	0.38310	2.29470	1.79020	K562	PUS1
TAMM41	ENSG00000144559.6	562.91500	435.70150	0.36950	2.50430	1.93550	K562	RBM15
TAMM41	ENSG00000144559.6	774.18530	573.66150	0.43240	3.20140	1.46560	K562	RBM17
TAMM41	ENSG00000144559.6	447.17420	291.57980	0.61680	3.43440	2.52180	K562	RPS19
TAMM41	ENSG00000144559.6	513.59150	303.13890	0.76050	2.66300	1.49170	K562	SF1
TAMM41	ENSG00000144559.6	262.97160	356.10570	-0.43740	1.97570	1.36600	K562	SRSF1
TAMM41	ENSG00000144559.6	431.23590	301.06950	0.51830	2.81740	1.71300	K562	U2AF1
TAMM41	ENSG00000144559.6	461.38820	562.90360	-0.28690	1.92110	1.31420	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

9 RBPs can affect the splicing of TAMM41 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625			11871187	11871338	11880695	11880788	0.24100	0.00000	0.00013	included	K562	MATR3
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625			11871187	11871338	11880695	11880788	0.42600	0.00122	0.05219	included	HepG2	SFPQ
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625			11871187	11871338	11880695	11880788	0.19100	0.00039	0.02079	included	HepG2	MATR3
SE	TAMM41	ENSG00000144559.6	chr3	-	11886364	11886570			11885502	11885685	11887975	11888359	0.20400	0.00138	0.08058	included	K562	HNRNPL
SE	TAMM41	ENSG00000144559.6	chr3	-	11868191	11868279			11858561	11858811	11871187	11871384	-0.17400	0.00004	0.00221	excluded	HepG2	SF3A3
SE	TAMM41	ENSG00000144559.6	chr3	-	11886364	11886570			11885502	11885685	11887975	11888359	0.28200	0.00000	0.00009	included	K562	CPSF6
SE	TAMM41	ENSG00000144559.6	chr3	-	11874476	11874625			11871187	11871338	11880695	11880788	0.15700	0.00003	0.00256	included	K562	PTBP1
SE	TAMM41	ENSG00000144559.6	chr3	-	11886364	11886570			11885502	11885685	11887975	11888359	0.21300	0.00650	0.08513	included	K562	HNRNPC
SE	TAMM41	ENSG00000144559.6	chr3	-	11868191	11868279			11858561	11858811	11871187	11871384	0.10800	0.00298	0.04651	included	K562	HNRNPC
A3SS	TAMM41	ENSG00000144559.6	chr3	-	11850990	11851232			11850990	11851156	11858665	11858811	0.08000	0.00003	0.00025	longer	K562	AQR
RI	TAMM41	ENSG00000144559.6	chr3	-	11849306	11851156			11849306	11849369	11850990	11851156	0.41300	0.00678	0.08113	included	HepG2	SRSF9
MXE	TAMM41	ENSG00000144559.6	chr3	-	11850990	11851156	11858665	11858811	11831915	11832055	11871187	11871338	-0.08000	0.01164	0.07159	2included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TAMM41

General Information

Functions

Localization

Domains (AlphaFold: TAMM41)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

20 proteins are bound to TAMM41 RNA:

eCLIP assay for TAMM41 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

28 RBPs can affect the gene expression of TAMM41 :

The Knockdown/knockout RNA-Seq assay for TAMM41 is not available on ENCORE database.

9 RBPs can affect the splicing of TAMM41 :

The Knockdown/knockout RNA-Seq assay for TAMM41 is not avaliable on ENCORE database.