SSBP2

General Information

Gene Name       : SSBP2
Gene ID             : ENSG00000145687.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSBP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSBP2ENSG00000145687.1671.3975.2673.33ENCSR000AEF
HepG2SSBP2ENSG00000145687.160.120.110.11ENCSR985KAT
K562SSBP2ENSG00000145687.1645.1252.9649.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSBP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSBP2 RNA is bound by 20 proteins.  







eCLIP assay for SSBP2 is not avaliable on ENCORE database.





20 proteins are bound to SSBP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr58071594480716011-3'-UTR,intron-Distal,intron-Proximal3.976126.12308K562PUM2
chr58071608380716128-3'-UTR,intron-Distal,intron-Proximal4.231355.20626K562PUM2
chr58071580580715907-3'-UTR,intron-Distal,intron-Proximal4.195864.23094K562TIA1
chr58104689181046933-5'-UTR,intron-Distal,intron-Proximal4.407793.86024K562EWSR1
chr58104679981046888-5'-UTR,CDS,intron-Distal,intron-Proximal3.603134.24220K562ZNF622
chr58078511480785127-CDS,intron-Distal3.767296.42513K562YBX3
chr58078507180785086-CDS,intron-Distal3.175086.15304K562YBX3
chr58074268880742734-CDS,intron-Distal4.5123812.30997K562LIN28B
chr58074460880744633-CDS,intron-Distal,intron-Proximal4.832877.60539K562LIN28B
chr58078508680785114-CDS,intron-Distal3.503118.07578K562YBX3
chr58074273480742742-CDS,intron-Distal,intron-Proximal3.997228.14875K562LIN28B
chr58104624781046420-intron-Distal3.582318.46801K562AKAP8L
chr58087436180874414-intron-Distal3.913825.16181K562PTBP1
chr58086169980861828-intron-Distal3.808123.06150K562KHSRP
chr58104662281046643-intron-Distal,intron-Proximal4.556065.23961K562GTF2F1
chr58104564681045748-intron-Distal3.532093.68882K562FAM120A
chr58089676680896871-intron-Distal3.260483.31830K562KHSRP
chr58103154681031610-intron-Distal3.940583.26999K562KHSRP
chr58104653581046646-intron-Distal,intron-Proximal4.131344.23488K562FAM120A
chr58103020981030311-intron-Distal3.629009.07651K562KHSRP
chr58085824280858353-intron-Distal4.381695.85485K562KHSRP
chr58089168080891733-intron-Distal4.457253.59909K562EXOSC5
chr58104596381046060-intron-Distal5.6811022.84677K562GTF2F1
chr58103802081038134-intron-Distal4.001244.07352K562KHSRP
chr58104651381046594-intron-Distal,intron-Proximal5.8747714.27215K562GTF2F1
chr58104616581046259-intron-Distal6.0674215.25849K562GTF2F1
chr58095607780956130-intron-Distal3.838504.61337K562EXOSC5
chr58104567581045751-intron-Distal3.203175.39895K562DROSHA
chr58104617681046234-intron-Distal4.653724.98766K562EWSR1
chr58104650181046577-intron-Distal,intron-Proximal4.822677.10563K562NONO
chr58082458580824748-intron-Distal4.894458.72817K562KHSRP
chr58089394380894046-intron-Distal3.803353.45805K562KHSRP
chr58102066881020718-intron-Distal4.207304.10688K562KHSRP
chr58104562881045719-intron-Distal3.834893.60936K562FUS
chr58104561381045692-intron-Distal4.3014213.94050K562CSTF2T
chr58098647080986545-intron-Distal4.714545.76685K562EXOSC5
chr58104577081045827-intron-Distal3.306423.69435K562AKAP8L
chr58104569981045753-intron-Distal3.439643.82735K562EWSR1
chr58104568181045738-intron-Distal4.1634211.26507K562GTF2F1
chr58104595581045983-intron-Distal5.264964.65802K562DROSHA
chr58088750580887568-intron-Distal4.330323.55787K562PTBP1
chr58104595081046060-intron-Distal4.8780710.85582K562EWSR1
chr58104650981046558-intron-Distal4.171528.98327K562CSTF2T
chr58102071881020799-intron-Distal3.439004.10408K562KHSRP
chr58103816181038223-intron-Distal3.999784.14103K562KHSRP
chr58103822381038329-intron-Distal3.699065.83959K562KHSRP
chr58082579580825860-intron-Distal4.201426.59655K562PTBP1
chr58087359580873671-intron-Distal3.051783.11628K562KHSRP
chr58104578181045834-intron-Distal4.617054.01524K562FAM120A
chr58104594781046060-intron-Distal5.731338.17882K562FAM120A
chr58104652081046636-intron-Distal,intron-Proximal5.287466.41528K562EWSR1
chr58104598681046063-intron-Distal5.8209314.91517K562CSTF2T
chr58104595081046005-intron-Distal4.685296.40665K562NONO
chr58087545880875531-intron-Distal3.447353.50893K562TARDBP
chr58104562281045699-intron-Distal5.446207.85700K562EWSR1
chr58104625881046347-intron-Distal4.5311510.04245K562CSTF2T
chr58101899881019121-intron-Distal5.2246019.33988K562QKI
chr58097264480972713-intron-Distal4.8282721.16644K562PTBP1
chr58101893181019046-intron-Distal3.799513.25538K562KHSRP
chr58104569281045748-intron-Distal5.6918014.66192K562CSTF2T
chr58089179980891847-intron-Distal4.522874.48560K562EXOSC5
chr58104578681045833-intron-Distal4.758016.12846K562EWSR1
chr58101122281011295-intron-Distal4.254323.55787K562PTBP1
chr58104595081045986-intron-Distal3.978057.66029K562CSTF2T
chr58104598681046057-intron-Distal4.518163.75920K562SLTM
chr58104624581046328-intron-Distal4.5836711.59008K562DROSHA
chr58098658080986625-intron-Distal4.346054.48623K562EXOSC5
chr58104578681045834-intron-Distal4.785227.20000K562CSTF2T
chr58104600581046053-intron-Distal4.139714.23759K562NONO
chr58098688080986901-intron-Distal3.846053.01445K562EXOSC5
chr58104654981046582-intron-Distal,intron-Proximal4.055163.36882K562SLTM
chr58104623481046320-intron-Distal5.169575.84224K562EWSR1
chr58104578281045834-intron-Distal5.5232610.40578K562GTF2F1
chr58104624381046358-intron-Distal5.351134.01524K562FAM120A
chr58087392080874063-intron-Distal4.038787.55138K562KHSRP
chr58104625981046341-intron-Distal6.2435516.47837K562GTF2F1
chr58087367180873846-intron-Distal4.3222310.39396K562KHSRP
chr58104602781046058-intron-Distal4.821443.84888K562DDX51
chr58098726280987347-intron-Distal3.825734.91094K562EXOSC5
chr58089285080892916-intron-Distal4.299503.89085K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSBP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSBP2 is not available on ENCORE database.

  • 32 RBPs can affect the levels of SSBP2.  








The Knockdown/knockout RNA-Seq assay for SSBP2 is not available on ENCORE database.





32 RBPs can affect the gene expression of SSBP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSBP2ENSG00000145687.11734.38220962.50510-0.390302.761701.54120K562ABCF1
SSBP2ENSG00000145687.11395.33580940.47170-1.2503018.8738017.50940K562AQR
SSBP2ENSG00000145687.11805.600301331.19790-0.7246011.284709.39720K562CELF1
SSBP2ENSG00000145687.11584.12460406.891500.521505.181703.35830K562DDX27
SSBP2ENSG00000145687.111103.64360886.486200.316003.307402.60510K562DDX47
SSBP2ENSG00000145687.11945.43460637.476500.568507.680806.57110K562EIF2S2
SSBP2ENSG00000145687.11528.33710415.559200.346302.135701.42990K562EIF3G
SSBP2ENSG00000145687.11493.80660367.382400.426602.853901.49230K562FUS
SSBP2ENSG00000145687.11480.17060632.69590-0.398003.183801.95880K562GLRX3
SSBP2ENSG00000145687.11413.44950567.95840-0.458103.088602.25160K562GPKOW
SSBP2ENSG00000145687.11657.85580849.57460-0.369002.557501.82860K562GRSF1
SSBP2ENSG00000145687.11406.58630582.32050-0.518304.237702.90810K562HNRNPA1
SSBP2ENSG00000145687.11611.65340801.12580-0.389302.982201.88120K562HNRNPL
SSBP2ENSG00000145687.11445.85360644.85150-0.532405.163103.92910K562HNRNPU
SSBP2ENSG00000145687.111230.78720938.064600.391703.107402.26640K562HSPD1
SSBP2ENSG00000145687.111410.095001156.711700.285702.110001.33200K562MBNL1
SSBP2ENSG00000145687.11510.91400739.09520-0.532706.997205.88850K562NSUN2
SSBP2ENSG00000145687.11444.11140588.57490-0.406302.610301.66050K562PCBP2
SSBP2ENSG00000145687.11763.922701181.29360-0.628907.179405.86030K562PUF60
SSBP2ENSG00000145687.11755.38430510.071700.566402.707001.31060K562RAVER1
SSBP2ENSG00000145687.11373.18320616.31470-0.723807.042205.62970K562RBM22
SSBP2ENSG00000145687.11273.94840384.27060-0.488202.664001.69130K562RCC2
SSBP2ENSG00000145687.11726.04860409.307000.826804.147003.14590K562RPS19
SSBP2ENSG00000145687.11809.73270471.108800.781302.729601.54050K562SF1
SSBP2ENSG00000145687.11594.41560747.17920-0.330003.025302.05220K562SRPK2
SSBP2ENSG00000145687.11465.37450629.98710-0.436903.225202.46660K562SRSF1
SSBP2ENSG00000145687.11327.60600461.39960-0.494104.186702.72770K562SRSF7
SSBP2ENSG00000145687.11373.10630637.63000-0.773107.524406.29270K562TARDBP
SSBP2ENSG00000145687.11519.78340809.29890-0.638805.573003.47400K562TRIP6
SSBP2ENSG00000145687.11490.52060670.56880-0.451103.567802.57620K562WDR3
SSBP2ENSG00000145687.11861.90790697.312400.305602.984602.10540K562WDR43
SSBP2ENSG00000145687.11682.383201059.54460-0.634807.408805.87920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSBP2 is not available on ENCORE database.





9 RBPs can affect the splicing of SSBP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSBP2ENSG00000145687.11chr5-808094468080953680785068807851288091129180911376-0.378000.000010.00059excludedK562SF3B4
SESSBP2ENSG00000145687.11chr5-807244038072450280708839807163528073324880733277-0.218000.000000.00003excludedK562SF3B4
SESSBP2ENSG00000145687.11chr5-809323758093243780809446808095368094608580946158-0.099000.000060.00165excludedK562PUS1
SESSBP2ENSG00000145687.11chr5-807244038072450280708839807163528073324880733277-0.067000.002300.06336excludedK562UTP18
SESSBP2ENSG00000145687.11chr5-807426868074274180738471807385428074460880744644-0.129000.002770.08114excludedK562TARDBP
SESSBP2ENSG00000145687.11chr5-809323758093243780809446808095368094608580946158-0.066000.002500.05564excludedK562AGGF1
A3SSSSBP2ENSG00000145687.11chr5-8076279280762884807627928076286080769518807695890.099000.001860.01206longerK562AQR
MXESSBP2ENSG00000145687.11chr5-80785068807851288080944680809536807703148077038180911291809113760.208000.001740.026741includedK562DROSHA
MXESSBP2ENSG00000145687.11chr5-80785068807851288080944680809536807703148077038180946085809461580.112000.002330.068581includedK562AGGF1
MXESSBP2ENSG00000145687.11chr5-80809446808095368091129180911376807850688078512880932375809324370.212000.004820.053891includedK562U2AF2
MXESSBP2ENSG00000145687.11chr5-8078506880785128808094468080953680770314807703818091129180911376-0.241000.002660.040622includedK562SF3B4
MXESSBP2ENSG00000145687.11chr5-80785068807851288080944680809536807703148077038180911291809113760.234000.000570.016871includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSBP2 is not avaliable on ENCORE database.