SDHAP3

General Information

Gene Name       : SDHAP3
Gene ID             : ENSG00000185986.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SDHAP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SDHAP3ENSG00000185986.110.281.210.74ENCSR000AEF
HepG2SDHAP3ENSG00000185986.115.622.394.00ENCSR985KAT
K562SDHAP3ENSG00000185986.112.020.661.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDHAP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDHAP3 RNA is bound by 9 proteins.  







eCLIP assay for SDHAP3 is not avaliable on ENCORE database.





9 proteins are bound to SDHAP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr515813941581553-intron-Distal3.045023.46712K562SAFB2
chr515743991574410-intron-Distal4.824266.16445HepG2PPIG
chr515810611581140-intron-Distal5.6773610.71076HepG2BCLAF1
chr515762931576380-intron-Distal,intron-Proximal4.5108315.09348HepG2GRWD1
chr515932371593277-intron-Distal3.165305.40132HepG2BCLAF1
chr515811401581237-intron-Distal4.080349.39582HepG2BCLAF1
chr515813991581463-intron-Distal3.083705.33826HepG2HLTF
chr515763951576425-intron-Distal,intron-Proximal3.368076.93667HepG2PPIG
chr515784051578473-intron-Distal3.119844.56843HepG2HLTF
chr515826431582740-intron-Distal3.009925.06972HepG2HLTF
chr515933851593399-intron-Distal4.066353.19625HepG2NCBP2
chr515795031579546-intron-Distal3.004553.72729HepG2GRWD1
chr515893051589366-intron-Distal,intron-Proximal4.056309.38298HepG2PRPF8
chr515784031578481-intron-Distal4.009304.23295HepG2GRWD1
chr515813091581357-intron-Distal3.225094.34695HepG2BCLAF1
chr515810661581121-intron-Distal3.367347.11419HepG2HLTF
chr515863931586456-intron-Distal3.780313.12080HepG2XPO5
chr515814301581540-intron-Distal4.0411711.53232HepG2BCLAF1
chr515945081594606-intron-Distal3.434968.67691HepG2NCBP2
chr515784811578546-intron-Distal3.091503.21309HepG2GRWD1
chr515893571589405-intron-Distal,intron-Proximal4.726975.85983HepG2GRWD1
chr515762931576326-intron-Distal,intron-Proximal4.2471012.35970HepG2PPIG
chr515795641579618-intron-Distal3.5340410.12893HepG2U2AF2
chr515813271581364-intron-Distal3.807764.70379HepG2HLTF
chr515743851574410-intron-Distal4.170274.21087HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDHAP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDHAP3 is not available on ENCORE database.

  • 31 RBPs can affect the levels of SDHAP3.  








The Knockdown/knockout RNA-Seq assay for SDHAP3 is not available on ENCORE database.





31 RBPs can affect the gene expression of SDHAP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDHAP3ENSG00000185986.10151.82100221.57840-0.545402.831702.21790HepG2ACO1
SDHAP3ENSG00000185986.1061.40420147.24760-1.261805.069704.37670HepG2AKAP1
SDHAP3ENSG00000185986.10273.02580189.891700.523802.452901.49860HepG2DDX5
SDHAP3ENSG00000185986.10263.84010116.457601.179806.793505.89160HepG2EIF2S1
SDHAP3ENSG00000185986.10379.64720267.813100.503303.166902.53110HepG2ETF1
SDHAP3ENSG00000185986.10173.17470102.020500.763303.364202.50170HepG2FUBP3
SDHAP3ENSG00000185986.10183.53290120.465000.607302.195701.60000HepG2G3BP1
SDHAP3ENSG00000185986.10245.17810127.948800.938205.151503.92340HepG2G3BP2
SDHAP3ENSG00000185986.10181.87640247.49280-0.444401.930201.35450HepG2HNRNPL
SDHAP3ENSG00000185986.10218.05540123.177900.823903.392802.26640HepG2KHSRP
SDHAP3ENSG00000185986.10253.48410176.816100.519502.062901.41240HepG2NSUN2
SDHAP3ENSG00000185986.1070.11530122.79600-0.808502.299301.50440HepG2PABPC1
SDHAP3ENSG00000185986.10190.73120119.047500.679902.694001.98070HepG2PABPC4
SDHAP3ENSG00000185986.10145.60220257.22060-0.821004.565903.82240HepG2PUF60
SDHAP3ENSG00000185986.10205.84470273.07300-0.407701.889501.37950HepG2PUM1
SDHAP3ENSG00000185986.1079.88770162.59910-1.025303.409102.62870HepG2RAVER1
SDHAP3ENSG00000185986.10194.71130124.265000.647802.947602.25500HepG2RBM25
SDHAP3ENSG00000185986.10186.45270131.073700.508302.089001.54360HepG2RECQL
SDHAP3ENSG00000185986.10206.77890134.904300.616102.253501.53070HepG2RPS3A
SDHAP3ENSG00000185986.10227.45490111.784101.024807.982807.13210HepG2SRSF9
SDHAP3ENSG00000185986.10338.65900219.496200.625504.701804.06880HepG2SSB
SDHAP3ENSG00000185986.10192.68750288.83890-0.584003.404402.72820HepG2SUCLG1
SDHAP3ENSG00000185986.10211.35480111.832500.918205.556004.89560HepG2TIAL1
SDHAP3ENSG00000185986.10117.85660186.27970-0.660402.615102.00350HepG2U2AF1
SDHAP3ENSG00000185986.10139.96500282.12420-1.011302.441901.52190HepG2U2AF2
SDHAP3ENSG00000185986.10132.4857077.026500.782302.681301.93380HepG2UCHL5
SDHAP3ENSG00000185986.10235.06230119.382300.977404.151202.91030HepG2UPF2
SDHAP3ENSG00000185986.10218.61370120.833800.855304.053702.72350HepG2XPO5
SDHAP3ENSG00000185986.10204.46220128.368900.671402.236701.57920HepG2XRN2
SDHAP3ENSG00000185986.10246.84050173.699200.506902.616501.96080HepG2ZC3H8
SDHAP3ENSG00000185986.1037.3600069.75990-0.900902.017001.45760K562AKAP8L
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDHAP3 is not available on ENCORE database.





3 RBPs can affect the splicing of SDHAP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESDHAP3ENSG00000185986.10chr5-158509815852481576293157642415893611589480-0.727000.000000.00027excludedK562AGGF1
MXESDHAP3ENSG00000185986.10chr5-157939115795991585098158524815762931576424158936115894800.249000.011670.061141includedHepG2U2AF2
MXESDHAP3ENSG00000185986.10chr5-15793911579599158509815852481576293157642415893611589480-0.263000.000970.036012includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDHAP3 is not avaliable on ENCORE database.