RWDD3

General Information

Gene Name       : RWDD3
Gene ID             : ENSG00000122481.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RWDD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RWDD3ENSG00000122481.1614.3910.1712.28ENCSR000AEF
HepG2RWDD3ENSG00000122481.168.3018.7113.51ENCSR985KAT
K562RWDD3ENSG00000122481.1624.4222.1023.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RWDD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RWDD3 RNA is bound by 2 proteins.  







eCLIP assay for RWDD3 is not avaliable on ENCORE database.





2 proteins are bound to RWDD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr19569981695699872+5'-UTR,CDS,intron-Distal,intron-Proximal4.221156.42503K562DDX3X
chr19569975095699816+5'-UTR,CDS,intron-Distal4.826434.54356K562DDX3X
chr19570358195703664+intron-Distal5.072898.61835K562TARDBP
chr19570870995708786+intron-Distal4.556054.92524K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RWDD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RWDD3 is not available on ENCORE database.

  • 37 RBPs can affect the levels of RWDD3.  








The Knockdown/knockout RNA-Seq assay for RWDD3 is not available on ENCORE database.





37 RBPs can affect the gene expression of RWDD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RWDD3ENSG00000122481.12234.46520314.09230-0.421802.478501.89760HepG2ACO1
RWDD3ENSG00000122481.12301.53750491.99860-0.706302.696202.17110HepG2AKAP1
RWDD3ENSG00000122481.12316.65530233.444600.439702.122101.33220HepG2DDX24
RWDD3ENSG00000122481.12237.53800404.76870-0.768903.722403.01530HepG2DDX6
RWDD3ENSG00000122481.12340.18180236.525200.524202.386501.37080HepG2ESF1
RWDD3ENSG00000122481.12671.50910523.616600.358802.836902.22970HepG2ETF1
RWDD3ENSG00000122481.12268.47280446.80700-0.734903.456502.75240HepG2NCBP2
RWDD3ENSG00000122481.12388.07860491.59880-0.341102.050101.39130HepG2NOL12
RWDD3ENSG00000122481.12252.73980178.540700.501302.067301.41630HepG2NSUN2
RWDD3ENSG00000122481.12265.35630398.02960-0.584902.406701.72940HepG2PABPC4
RWDD3ENSG00000122481.12354.58140498.14120-0.490404.657703.93070HepG2PUM1
RWDD3ENSG00000122481.12138.77690195.66350-0.495601.817901.30920HepG2RPS19
RWDD3ENSG00000122481.12430.02130282.852400.604303.095002.25080HepG2RPS3A
RWDD3ENSG00000122481.12321.67370463.32490-0.526404.418603.66110HepG2SRSF5
RWDD3ENSG00000122481.12277.83330195.884300.504102.803202.10280HepG2SRSF7
RWDD3ENSG00000122481.12627.20470429.159400.547305.928705.23190HepG2SSB
RWDD3ENSG00000122481.12410.36670526.93550-0.360702.631602.02170HepG2SUCLG1
RWDD3ENSG00000122481.12409.30090263.670000.634303.031702.32810HepG2SUPV3L1
RWDD3ENSG00000122481.12433.13550336.059000.366002.097801.59680HepG2TAF15
RWDD3ENSG00000122481.12164.79900236.70280-0.522402.702402.14320HepG2TRIM56
RWDD3ENSG00000122481.12331.97140485.24670-0.547702.848702.00110HepG2UBE2L3
RWDD3ENSG00000122481.12358.34920241.398100.569902.252001.35320HepG2UPF2
RWDD3ENSG00000122481.12371.35600259.554700.516702.195601.54370HepG2XRN2
RWDD3ENSG00000122481.12221.03550313.28190-0.503203.360502.77460HepG2ZNF622
RWDD3ENSG00000122481.12290.96380398.62730-0.454203.023902.19220K562EIF3G
RWDD3ENSG00000122481.12544.84600360.635100.595203.474102.66390K562G3BP2
RWDD3ENSG00000122481.12218.41630326.13410-0.578403.163802.53130K562HNRNPC
RWDD3ENSG00000122481.12397.26490276.873400.520802.713701.79280K562HNRNPM
RWDD3ENSG00000122481.12596.27840456.338600.385802.250601.52890K562HSPD1
RWDD3ENSG00000122481.12361.23560501.51280-0.473302.420901.48000K562IGF2BP2
RWDD3ENSG00000122481.12378.15810510.21460-0.432102.832701.62410K562IGF2BP3
RWDD3ENSG00000122481.12792.06100605.330400.387802.562701.77220K562KIF1C
RWDD3ENSG00000122481.12405.52940512.32170-0.337202.002801.42120K562PTBP1
RWDD3ENSG00000122481.12253.18190481.49100-0.927303.019901.74480K562SF1
RWDD3ENSG00000122481.12263.31300375.03150-0.510203.292502.35860K562SF3B4
RWDD3ENSG00000122481.12257.63930502.21610-0.963008.480007.24760K562SRSF1
RWDD3ENSG00000122481.12598.41270441.620000.438202.706901.36380K562SSRP1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RWDD3 is not available on ENCORE database.





17 RBPs can affect the splicing of RWDD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570976695709967-0.431000.000110.04905excludedK562IGF2BP2
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719571209795712213-0.524000.000000.00000excludedK562SRSF1
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570976695709967-0.202000.000570.02006excludedK562AKAP8L
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570976695709967-0.301000.000000.00609excludedK562TROVE2
SERWDD3ENSG00000122481.12chr1+957097669571025495699710956998719571209795712213-0.351000.000770.02170excludedHepG2HNRNPK
SERWDD3ENSG00000122481.12chr1+957053329570546595699758956998719570976695711058-0.342000.001560.02047excludedHepG2U2AF2
SERWDD3ENSG00000122481.12chr1+957120979571221395699780956998719571231195712773-0.187000.000040.00070excludedK562AQR
SERWDD3ENSG00000122481.12chr1+9570533295705465957029039570301695709766957102540.196000.001880.06377includedK562FXR1
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570976695709967-0.276000.000050.00144excludedK562PUS1
SERWDD3ENSG00000122481.12chr1+957097669571025495699710956998719571209795712213-0.496000.000000.00006excludedHepG2SRSF1
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570533295705465-0.146000.000600.08570excludedK562EIF4G2
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570976695709967-0.181000.003290.08209excludedK562UTP18
SERWDD3ENSG00000122481.12chr1+957053329570546595699776956998719570976695710254-0.476000.000050.05407excludedK562TRA2A
SERWDD3ENSG00000122481.12chr1+9570976695709880956997669569987195712097957122130.286000.004380.08382includedK562AGGF1
SERWDD3ENSG00000122481.12chr1+957053329570546595702903957030169570976695710254-0.107000.005080.09419excludedK562AGGF1
SERWDD3ENSG00000122481.12chr1+9570290395703016956997699569987195709766957099670.226000.000430.08025includedK562SAFB
SERWDD3ENSG00000122481.12chr1+957097669571025495699710956998719571209795712213-0.463000.000320.06571excludedK562SAFB
SERWDD3ENSG00000122481.12chr1+957029039570301695699769956998719570976695709967-0.412000.000030.00086excludedK562HNRNPC
MXERWDD3ENSG00000122481.12chr1+9570976695710254957120979571221395705332957054659571231195712773-0.206000.000020.000822includedHepG2SRSF1
MXERWDD3ENSG00000122481.12chr1+9570976695710254957120979571221395699710956998719571231195712781-0.171000.002640.049532includedHepG2SRSF1
MXERWDD3ENSG00000122481.12chr1+9570533295705465957120979571221395699776956998719571231195712773-0.102000.007060.080512includedK562U2AF1
MXERWDD3ENSG00000122481.12chr1+95709766957098809571209795712213956997109569987195712311957127810.185000.000390.009831includedK562PUS1
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.224000.000040.001461includedK562PUS1
MXERWDD3ENSG00000122481.12chr1+95709766957098809571209795712213956997109569987195712311957127810.234000.000000.000261includedK562AGGF1
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.232000.000000.000341includedK562AGGF1
MXERWDD3ENSG00000122481.12chr1+9570533295705465957097669570988095702903957030169571209795712213-0.087000.000830.032422includedK562AGGF1
MXERWDD3ENSG00000122481.12chr1+9570976695710254957120979571221395705332957054659571231195712773-0.196000.000000.000182includedK562SRSF1
MXERWDD3ENSG00000122481.12chr1+9570976695710254957120979571221395705332957054659571231195712773-0.178000.002720.077732includedHepG2TAF15
MXERWDD3ENSG00000122481.12chr1+95705332957054659570976695709880957029039570301695712097957122130.148000.000820.036331includedK562FXR1
MXERWDD3ENSG00000122481.12chr1+95709766957098809571209795712213957053329570546595712311957127730.115000.005260.037511includedK562AQR
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213957053329570546595712311957127730.101000.015300.088981includedK562AQR
MXERWDD3ENSG00000122481.12chr1+9570533295705465957097669570988095702903957030169571231195712773-0.126000.016350.093792includedK562AQR
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.204000.000060.006831includedK562UTP18
MXERWDD3ENSG00000122481.12chr1+9570533295705465957097669570988095702903957030169571209795712213-0.077000.001100.057472includedK562UTP18
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.269000.000370.003471includedHepG2U2AF2
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.210000.000010.001311includedK562TRA2A
MXERWDD3ENSG00000122481.12chr1+9570976695710254957120979571221395699710956998719571231195712781-0.228000.000220.016362includedK562SAFB
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.179000.000370.022861includedK562IGF2BP2
MXERWDD3ENSG00000122481.12chr1+95709766957098809571209795712213956997109569987195712311957127810.179000.002220.073271includedK562AKAP8L
MXERWDD3ENSG00000122481.12chr1+95709766957102549571209795712213956997109569987195712311957127810.197000.002620.081441includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RWDD3 is not avaliable on ENCORE database.