PDCD4-AS1

General Information

Gene Name       : PDCD4-AS1
Gene ID             : ENSG00000203497.2
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDCD4-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDCD4-AS1ENSG00000203497.24.453.754.10ENCSR000AEF
HepG2PDCD4-AS1ENSG00000203497.25.765.925.84ENCSR985KAT
K562PDCD4-AS1ENSG00000203497.22.591.722.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDCD4-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDCD4-AS1 RNA is bound by 6 proteins.  







eCLIP assay for PDCD4-AS1 is not avaliable on ENCORE database.





6 proteins are bound to PDCD4-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10112631357112631463-intron-Distal4.1671614.19915HepG2RBFOX2
chr10112631361112631432-intron-Distal4.122293.04224HepG2SUGP2
chr10112631382112631493-intron-Distal4.080914.03786HepG2NKRF
chr10112631463112631542-intron-Distal5.0615315.33649HepG2RBFOX2
chr10112631370112631488-intron-Distal4.224713.57264HepG2GTF2F1
chr10112631345112631426-intron-Distal3.921653.14880HepG2DROSHA
chr10112631349112631464-intron-Distal4.369475.59467HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDCD4-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDCD4-AS1 is not available on ENCORE database.

  • 38 RBPs can affect the levels of PDCD4-AS1.  








The Knockdown/knockout RNA-Seq assay for PDCD4-AS1 is not available on ENCORE database.





38 RBPs can affect the gene expression of PDCD4-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDCD4-AS1ENSG00000203497.2201.5807082.624601.286607.488506.22600HepG2ASCC1
PDCD4-AS1ENSG00000203497.258.89280100.08330-0.765002.354601.71210HepG2AUH
PDCD4-AS1ENSG00000203497.2185.5086074.548201.315105.025003.69390HepG2CCAR1
PDCD4-AS1ENSG00000203497.2124.8012050.614801.301906.567105.62230HepG2CKAP4
PDCD4-AS1ENSG00000203497.290.9257046.819800.957503.496902.57300HepG2DDX19B
PDCD4-AS1ENSG00000203497.2106.9657057.895600.885502.790102.10990HepG2DDX21
PDCD4-AS1ENSG00000203497.2114.5710056.659901.015703.590902.54170HepG2DDX24
PDCD4-AS1ENSG00000203497.222.7972082.15690-1.849505.776204.91260HepG2DDX6
PDCD4-AS1ENSG00000203497.295.4104048.432400.978103.140102.42520HepG2DKC1
PDCD4-AS1ENSG00000203497.289.8579043.368901.050902.929401.79110HepG2EFTUD2
PDCD4-AS1ENSG00000203497.219.6983078.99660-2.003706.397505.51690HepG2EIF2S1
PDCD4-AS1ENSG00000203497.220.7889084.99160-2.031506.190605.19150HepG2EIF4B
PDCD4-AS1ENSG00000203497.230.9842067.54800-1.124402.793102.00270HepG2FUBP3
PDCD4-AS1ENSG00000203497.237.6790069.70810-0.887602.231301.32110HepG2GNB2L1
PDCD4-AS1ENSG00000203497.2181.6911057.151801.6685010.287409.15990HepG2HNRNPA1
PDCD4-AS1ENSG00000203497.2137.3187063.569101.111004.295403.44560HepG2HNRNPC
PDCD4-AS1ENSG00000203497.2136.9224063.148901.116405.582804.74630HepG2HNRNPU
PDCD4-AS1ENSG00000203497.2101.4912044.197601.199202.575101.55800HepG2METAP2
PDCD4-AS1ENSG00000203497.2158.5121090.683800.805602.950002.29750HepG2NCBP2
PDCD4-AS1ENSG00000203497.251.9526089.70340-0.788002.155801.48080HepG2NOL12
PDCD4-AS1ENSG00000203497.2118.3946062.508800.921403.411102.48000HepG2PARN
PDCD4-AS1ENSG00000203497.2173.6496061.682601.4931010.351908.99350HepG2PRPF4
PDCD4-AS1ENSG00000203497.245.3023090.83910-1.003702.910402.22360HepG2PUM2
PDCD4-AS1ENSG00000203497.2137.5643051.562201.415607.973207.01810HepG2PUS1
PDCD4-AS1ENSG00000203497.210.5949055.56030-2.390705.101304.15880HepG2RAVER1
PDCD4-AS1ENSG00000203497.2142.8168082.354100.794202.661301.68720HepG2RBM27
PDCD4-AS1ENSG00000203497.218.6812054.60320-1.547403.505202.44250HepG2RPS10
PDCD4-AS1ENSG00000203497.277.1099019.834001.958806.273205.07450HepG2RPS3A
PDCD4-AS1ENSG00000203497.228.2630056.23790-0.992602.177301.59390HepG2SAFB2
PDCD4-AS1ENSG00000203497.259.51550108.47350-0.866003.039702.52250HepG2SRFBP1
PDCD4-AS1ENSG00000203497.2127.5204077.010200.727502.398101.94950HepG2SRSF1
PDCD4-AS1ENSG00000203497.233.4812062.65160-0.904002.110801.61540HepG2SRSF9
PDCD4-AS1ENSG00000203497.2201.7818094.186701.099107.709706.93760HepG2SSB
PDCD4-AS1ENSG00000203497.2127.5356082.467100.628902.273701.63040HepG2UPF1
PDCD4-AS1ENSG00000203497.2131.9073045.866301.523904.934103.97430HepG2XRN2
PDCD4-AS1ENSG00000203497.227.1462090.69720-1.740307.634106.84260HepG2ZNF622
PDCD4-AS1ENSG00000203497.2155.0673019.252803.0097018.5657016.48920K562PCBP3
PDCD4-AS1ENSG00000203497.2107.6319014.767002.865608.031606.68930K562POLR2G
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDCD4-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PDCD4-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PDCD4-AS1 is not avaliable on ENCORE database.