MED27

General Information

Gene Name : MED27
Gene ID : ENSG00000160563.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MED27)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MED27	ENSG00000160563.13	14.17	18.77	16.47	ENCSR000AEF
HepG2	MED27	ENSG00000160563.13	18.79	15.87	17.33	ENCSR985KAT
K562	MED27	ENSG00000160563.13	31.12	29.93	30.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MED27 is not avaliable on ENCORE database.

Proteins bound to RNA

MED27 RNA is bound by 11 proteins.

CanvasJS.com

eCLIP assay for MED27 is not avaliable on ENCORE database.

11 proteins are bound to MED27 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	134916888	134916980	-	intron-Distal	6.05175	22.96718	HepG2	DKC1
chr9	134839635	134839702	-	intron-Distal	6.57264	20.34004	K562	AGGF1
chr9	134766224	134766312	-	intron-Distal	5.23531	16.02742	HepG2	QKI
chr9	134916407	134916510	-	intron-Distal	5.97871	10.98212	K562	PTBP1
chr9	134839642	134839823	-	intron-Distal	5.75718	10.00393	HepG2	HNRNPL
chr9	134849584	134849709	-	intron-Distal	5.78865	9.99398	K562	QKI
chr9	134946861	134946924	-	intron-Distal	5.06148	9.32163	K562	TARDBP
chr9	134776279	134776492	-	intron-Distal	5.30638	9.00303	HepG2	PCBP2
chr9	134766228	134766346	-	intron-Distal	5.29327	7.90406	K562	QKI
chr9	134947185	134947259	-	intron-Distal	4.94098	7.89429	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 28 entries

eCLIP assay for MED27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MED27 is not available on ENCORE database.
43 RBPs can affect the levels of MED27.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MED27 is not available on ENCORE database.

43 RBPs can affect the gene expression of MED27 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MED27	ENSG00000160563.9	536.64300	270.19340	0.98990	7.74780	6.90560	HepG2	AKAP1
MED27	ENSG00000160563.9	652.42180	414.44500	0.65450	7.46160	6.53220	K562	FXR1
MED27	ENSG00000160563.9	109.54120	269.52850	-1.29900	7.11280	5.85550	HepG2	SNRNP70
MED27	ENSG00000160563.9	411.52060	245.79110	0.74340	6.36900	5.72360	HepG2	SRSF1
MED27	ENSG00000160563.9	462.96320	279.73670	0.72670	6.92350	5.67550	K562	EIF3G
MED27	ENSG00000160563.9	854.68210	581.45750	0.55560	6.87060	5.38630	K562	DKC1
MED27	ENSG00000160563.9	414.89670	246.42010	0.75150	5.60310	4.78770	HepG2	BOP1
MED27	ENSG00000160563.9	438.72480	258.81180	0.76130	5.15350	4.32340	HepG2	DDX3X
MED27	ENSG00000160563.9	114.98280	226.22690	-0.97640	5.17940	4.26450	HepG2	CPSF6
MED27	ENSG00000160563.9	115.40950	256.89740	-1.15440	5.35210	4.00500	HepG2	DDX59
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MED27 is not available on ENCORE database.

4 RBPs can affect the splicing of MED27 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	MED27	ENSG00000160563.9	chr9	-	134769271	134769458			134769271	134769379	134814767	134814891	0.05300	0.00000	0.00000	longer	K562	AQR
A3SS	MED27	ENSG00000160563.9	chr9	-	134952828	134953003			134952828	134952973	134955028	134955253	0.05200	0.00001	0.00006	longer	K562	AQR
SE	MED27	ENSG00000160563.9	chr9	-	134889723	134889854			134814767	134814861	134952828	134952973	-0.06400	0.00003	0.00063	excluded	K562	AQR
MXE	MED27	ENSG00000160563.9	chr9	-	134759444	134759486	134769271	134769404	134738449	134738527	134814767	134814861	0.05500	0.00005	0.00064	1included	K562	AQR
MXE	MED27	ENSG00000160563.9	chr9	-	134759444	134759486	134769271	134769379	134738449	134738527	134814767	134814861	-0.14100	0.00008	0.00552	2included	K562	PPIL4
MXE	MED27	ENSG00000160563.9	chr9	-	134759444	134759486	134814767	134814891	134738449	134738527	134952828	134952973	0.06400	0.00047	0.00471	1included	K562	AQR
SE	MED27	ENSG00000160563.9	chr9	-	134744570	134744771			134738449	134738527	134759444	134759486	0.06400	0.00074	0.00950	included	K562	AQR
MXE	MED27	ENSG00000160563.9	chr9	-	134759444	134759486	134769271	134769379	134738449	134738527	134814767	134814861	-0.18600	0.00133	0.02235	2included	K562	DROSHA
MXE	MED27	ENSG00000160563.9	chr9	-	134769271	134769379	134814767	134814861	134759444	134759486	134952828	134952973	0.14200	0.01162	0.07150	1included	K562	AQR
MXE	MED27	ENSG00000160563.9	chr9	-	134759444	134759486	134769271	134769379	134738449	134738527	134814767	134814861	-0.13800	0.01987	0.09217	2included	HepG2	U2AF2

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MED27

General Information

Functions

Localization

Domains (AlphaFold: MED27)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MED27 is not avaliable on ENCORE database.

11 proteins are bound to MED27 RNA:

eCLIP assay for MED27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MED27 is not available on ENCORE database.

43 RBPs can affect the gene expression of MED27 :

The Knockdown/knockout RNA-Seq assay for MED27 is not available on ENCORE database.

4 RBPs can affect the splicing of MED27 :

The Knockdown/knockout RNA-Seq assay for MED27 is not avaliable on ENCORE database.