LINC00669

General Information

Gene Name       : LINC00669
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00669)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00669 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00669 RNA is bound by 11 proteins.  







eCLIP assay for LINC00669 is not avaliable on ENCORE database.





11 proteins are bound to LINC00669 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr183703573037035832-intron-Distal4.8155410.58655HepG2QKI
chr183731828737318354-intron-Distal4.8738411.26927HepG2HNRNPL
chr183705592837055967-intron-Distal4.672845.89032HepG2QKI
chr183719233937192390-intron-Distal3.444533.34990HepG2PTBP1
chr183709177137091941-intron-Distal4.6839918.00564HepG2PTBP1
chr183731826737318287-intron-Distal4.249555.88747HepG2HNRNPL
chr183709178337091896-intron-Distal4.463579.92481HepG2MATR3
chr183730475037304834-intron-Distal4.477873.05187HepG2QKI
chr183700560537005704-intron-Distal3.320645.59320HepG2SUGP2
chr183698103036981080-intron-Distal4.006996.39350HepG2HNRNPL
chr183726255237262653-intron-Distal4.233884.40847HepG2PTBP1
chr183724710037247156-intron-Distal4.885174.51355HepG2PTBP1
chr183686894836869028-intron-Distal4.895623.55640HepG2QKI
chr183731367537313726-intron-Distal5.161366.87785HepG2PTBP1
chr183688725236887375-intron-Distal3.317734.51897HepG2HNRNPL
chr183709157837091629-intron-Distal4.466075.07733HepG2PTBP1
chr183725111737251187-intron-Distal4.198486.78885HepG2QKI
chr183703568537035730-intron-Distal3.474753.59771HepG2QKI
chr183705596737056039-intron-Distal3.333803.35585HepG2QKI
chr183692845736928506-intron-Distal3.789083.41489HepG2CSTF2
chr183738003137380053-intron-Distal3.222783.55613HepG2PPIG
chr183733128837331325-intron-Distal,intron-Proximal3.135903.61427HepG2PPIG
chr183682428936824500-intron-Distal3.995473.19026HepG2HNRNPL
chr183731808737318111-intron-Distal3.287854.27174HepG2HNRNPL
chr183699844636998523-intron-Distal3.592693.68462HepG2MATR3
chr183702827137028340-intron-Distal5.3495510.01406HepG2PTBP1
chr183728763837287778-intron-Distal4.938626.32185HepG2LSM11
chr183700235237002543-intron-Distal3.317735.38424HepG2HNRNPL
chr183692501136925065-intron-Distal5.326018.82480HepG2PTBP1
chr183701675337016838-intron-Distal5.182279.03229HepG2QKI
chr183692506536925163-intron-Distal4.6561412.38260HepG2PTBP1
chr183719139937191463-intron-Distal4.619723.78533HepG2PTBP1
chr183724833137248431-intron-Distal4.7600610.84081HepG2PTBP1
chr183725135937251436-intron-Distal3.674025.32632HepG2QKI
chr183708257537082673-intron-Distal4.851336.10195HepG2PTBP1
chr183699840436998498-intron-Distal5.2416819.43553HepG2PTBP1
chr183738019237380269-intron-Distal3.392043.52645HepG2NCBP2
chr183690408936904198-intron-Distal4.466724.24565HepG2HNRNPL
chr183721453237214609-intron-Distal4.008313.16986HepG2QKI
chr183719149337191554-intron-Distal5.184125.84045HepG2PTBP1
chr183731823137318252-intron-Distal3.184354.59838HepG2HNRNPL
chr183724715637247215-intron-Distal3.410576.83794HepG2PTBP1
chr183709198137092082-intron-Distal4.931735.70028HepG2MATR3
chr183693074736930849-intron-Distal4.198484.30850HepG2QKI
chr183699559036995675-intron-Distal3.618654.51074HepG2HNRNPL
chr183731288537313017-intron-Distal3.264595.44925HepG2PTBP1
chr183709961037099704-intron-Distal5.010035.28062HepG2XPO5
chr183697227236972364-intron-Distal3.466603.84025HepG2SUGP2
chr183699849836998548-intron-Distal4.168264.27936HepG2PTBP1
chr183704831937048371-intron-Distal5.5339311.15144HepG2QKI
chr183698028236980378-intron-Distal4.803814.89163HepG2HNRNPL
chr183711542137115580-intron-Distal,intron-Proximal4.611055.11007HepG2GRWD1
chr183729604637296147-intron-Distal4.345089.29383HepG2PTBP1
chr183729033837290431-intron-Distal3.221196.75895HepG2HNRNPL
chr183709925737099303-intron-Distal3.184123.30286HepG2PTBP1
chr183703737937037505-intron-Distal3.557666.55166HepG2PTBP1
chr183698109536981153-intron-Distal4.335553.71677HepG2HNRNPL
chr183697154436971588-intron-Distal4.770025.58061HepG2SUGP2
chr183700420837004276-intron-Distal4.510255.57507HepG2HNRNPL
chr183708846637088543-intron-Distal4.716575.20135HepG2QKI
chr183727475237274852-intron-Distal4.363553.55640HepG2QKI
chr183684615436846245-intron-Distal4.395624.80665HepG2QKI
chr183708838637088466-intron-Distal3.624887.06840HepG2QKI
chr183731806137318087-intron-Distal3.435694.70739HepG2HNRNPL
chr183726269137262759-intron-Distal5.4747510.79727HepG2QKI
chr183699122236991314-intron-Distal6.0729215.77934HepG2PTBP1
chr183724462637244718-intron-Distal5.6587610.04496HepG2QKI
chr183731324237313324-intron-Distal4.255743.45317HepG2HNRNPL
chr183731800237318041-intron-Distal4.035968.18013HepG2HNRNPL
chr183679501236795096-intron-Distal4.147353.28841HepG2PTBP1
chr183731820437318231-intron-Distal3.267495.63658HepG2HNRNPL
chr183680381836803944-intron-Distal3.778593.05187HepG2QKI
chr183726279237262856-intron-Distal4.000065.32632HepG2QKI
chr183709195737092053-intron-Distal4.927154.52538HepG2PTBP1
chr183705589037055928-intron-Distal4.442835.20135HepG2QKI
chr183719213037192199-intron-Distal3.758555.36899HepG2PTBP1
chr183700710837007206-intron-Distal4.453773.79098HepG2SUGP2
chr183703736737037485-intron-Distal4.078125.95721HepG2MATR3
chr183698098036981030-intron-Distal3.170434.70739HepG2HNRNPL
chr183698118536981291-intron-Distal3.167305.87152HepG2HNRNPL
chr183731804137318061-intron-Distal3.311615.01860HepG2HNRNPL
chr183727650137276636-intron-Distal4.1824214.77936HepG2QKI
chr183721559037215665-intron-Distal3.426327.84165HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00669 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00669 is not available on ENCORE database.

  • 47 RBPs can affect the levels of LINC00669.  








The Knockdown/knockout RNA-Seq assay for LINC00669 is not available on ENCORE database.





47 RBPs can affect the gene expression of LINC00669 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00669ENSG00000267374.131.8227063.16930-0.989202.468101.88830HepG2ACO1
LINC00669ENSG00000267374.117.1923064.31060-1.903304.616903.95290HepG2AKAP1
LINC00669ENSG00000267374.127.7439063.44400-1.193303.214402.39490HepG2AKAP8L
LINC00669ENSG00000267374.111.9491053.21650-2.155005.138304.08540HepG2ASCC1
LINC00669ENSG00000267374.13.2205040.96130-3.668907.376906.45580HepG2BOP1
LINC00669ENSG00000267374.132.4851069.90100-1.105502.716101.95130HepG2CALR
LINC00669ENSG00000267374.115.1169063.12900-2.062106.889605.92520HepG2CKAP4
LINC00669ENSG00000267374.145.3733091.70990-1.015203.222702.53970HepG2CELF1
LINC00669ENSG00000267374.129.7430058.41030-0.973702.511801.71430HepG2DDX19B
LINC00669ENSG00000267374.128.5130058.38030-1.033902.238101.62060HepG2DDX21
LINC00669ENSG00000267374.17.3563061.61510-3.066209.108608.02920HepG2DDX3X
LINC00669ENSG00000267374.122.6450054.22790-1.259802.168701.47580HepG2DDX55
LINC00669ENSG00000267374.19.3649050.88240-2.441805.598404.77150HepG2EIF2S1
LINC00669ENSG00000267374.112.8384047.14510-1.876604.116403.02810HepG2EIF3D
LINC00669ENSG00000267374.145.6169090.62100-0.990303.046302.07100HepG2HNRNPA2B1
LINC00669ENSG00000267374.18.3852053.50040-2.673606.756505.74490HepG2IGF2BP2
LINC00669ENSG00000267374.129.83040100.78930-1.756506.693905.38710HepG2LARP4
LINC00669ENSG00000267374.125.3422057.05390-1.170802.213501.64600HepG2MATR3
LINC00669ENSG00000267374.115.2396058.40250-1.938204.792103.97100HepG2NCBP2
LINC00669ENSG00000267374.117.0146049.77950-1.548802.752201.66250HepG2NONO
LINC00669ENSG00000267374.113.5302052.03300-1.943204.552303.63790HepG2PABPC4
LINC00669ENSG00000267374.121.3242071.79670-1.751404.113502.86400HepG2PCBP2
LINC00669ENSG00000267374.115.1251041.84960-1.468302.307901.56720HepG2PRPF8
LINC00669ENSG00000267374.149.5745093.33450-0.912802.574001.99650HepG2PUF60
LINC00669ENSG00000267374.132.0456099.08240-1.628507.162006.29920HepG2PUM1
LINC00669ENSG00000267374.158.0927099.00770-0.769202.110901.52070HepG2PUM2
LINC00669ENSG00000267374.127.9032069.31460-1.312702.732202.03170HepG2RAVER1
LINC00669ENSG00000267374.18.3486060.44260-2.856008.269607.48490HepG2RBM22
LINC00669ENSG00000267374.18.9526045.59380-2.348505.247504.34630HepG2RPLP0
LINC00669ENSG00000267374.112.2801068.03480-2.469906.352304.96160HepG2RPS10
LINC00669ENSG00000267374.17.2881045.87910-2.654206.475805.57880HepG2RPS19
LINC00669ENSG00000267374.130.0957073.48540-1.287903.723702.79910HepG2RPS2
LINC00669ENSG00000267374.139.4644075.02400-0.926802.520701.49690HepG2RPS5
LINC00669ENSG00000267374.111.0151041.39960-1.910103.212402.37400HepG2RRP9
LINC00669ENSG00000267374.137.8142072.33920-0.935802.519001.87600HepG2SF3A3
LINC00669ENSG00000267374.112.3094053.84340-2.129003.434401.77500HepG2SFPQ
LINC00669ENSG00000267374.121.9725068.26930-1.635504.909204.29560HepG2SRFBP1
LINC00669ENSG00000267374.133.6730092.15870-1.452505.387804.55590HepG2SRSF5
LINC00669ENSG00000267374.112.9316043.58930-1.753103.830403.20250HepG2SRSF9
LINC00669ENSG00000267374.112.6768053.98810-2.090504.258503.44510HepG2SUPV3L1
LINC00669ENSG00000267374.17.5678036.18930-2.257603.255902.17900HepG2TFIP11
LINC00669ENSG00000267374.113.3578054.24530-2.021805.532404.87380HepG2TIAL1
LINC00669ENSG00000267374.114.2641057.72700-2.016903.269302.19610HepG2U2AF2
LINC00669ENSG00000267374.146.7840096.52710-1.044902.248101.49840HepG2UBE2L3
LINC00669ENSG00000267374.121.9171064.15340-1.549504.586903.72480HepG2UPF1
LINC00669ENSG00000267374.134.2814061.93820-0.853401.814401.30700HepG2UTP3
LINC00669ENSG00000267374.19.2245070.55700-2.9353011.7218010.78850HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00669 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LINC00669 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LINC00669 is not avaliable on ENCORE database.