CTC-260F20.3

General Information

Gene Name       : CTC-260F20.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTC-260F20.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTC-260F20.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTC-260F20.3 RNA is bound by 38 proteins.  







eCLIP assay for CTC-260F20.3 is not avaliable on ENCORE database.





38 proteins are bound to CTC-260F20.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191962703419627099+5'-UTR,CDS3.2036214.11762K562DDX55
chr191962704019627113+5'-UTR,CDS3.1536921.83499K562DDX3X
chr191962703719627112+5'-UTR,CDS4.4241714.58011K562APOBEC3C
chr191962703819627110+5'-UTR,CDS4.4227413.26557K562PABPC4
chr191962709119627141+CDS3.110554.74199K562PUM1
chr191963851419638547+3'-UTR,CDS3.5985113.06312K562RPS3
chr191963700519637052+CDS3.9500937.33914K562PABPC4
chr191963851219638579+3'-UTR,CDS4.3606117.13265HepG2LARP4
chr191962712319627175+CDS,intron-Proximal4.163684.75655HepG2PRPF8
chr191963855619638571+3'-UTR,CDS4.400329.96973K562PABPC4
chr191962704719627105+CDS3.906769.68041HepG2LARP4
chr191962713519627142+CDS,intron-Proximal3.3039018.29891K562ZNF622
chr191963816019638172+3'-UTR,CDS,intron-Proximal3.541889.16870K562AQR
chr191963844819638541+3'-UTR,CDS,intron-Proximal3.4082315.45674K562SF3B4
chr191962704719627102+CDS4.1680421.60602K562RPS3
chr191963812619638179+3'-UTR,CDS,intron-Proximal3.2084710.92801HepG2GRWD1
chr191963699019637002+CDS,intron-Proximal3.6898812.28783K562UCHL5
chr191963855419638579+3'-UTR,CDS3.3856012.93622K562RPS3
chr191963808819638117+3'-UTR,CDS,intron-Proximal4.3402210.28410K562ZNF800
chr191963808819638141+3'-UTR,CDS,intron-Proximal3.362538.57377HepG2LARP4
chr191963705219637069+3'-UTR,CDS3.317448.05355K562PABPC4
chr191963850919638547+3'-UTR,CDS,intron-Proximal3.5357310.77572K562GRWD1
chr191963808919638136+3'-UTR,CDS,intron-Proximal3.182847.97803K562GRWD1
chr191963699019637067+3'-UTR,CDS,intron-Proximal3.5028411.17009K562APOBEC3C
chr191963810019638126+3'-UTR,CDS3.099128.38419HepG2GRWD1
chr191963808919638106+3'-UTR,CDS,intron-Proximal3.511968.02406K562PABPC4
chr191963857119638579+3'-UTR,CDS4.603028.50867K562PABPC4
chr191962707719627142+CDS,intron-Proximal3.116514.70792K562GEMIN5
chr191963700219637068+3'-UTR,CDS3.4807520.10580K562UCHL5
chr191963701619637073+3'-UTR,CDS,intron-Proximal4.798725.41449HepG2ZNF800
chr191963698919637003+CDS,intron-Proximal3.0336417.01017K562ZNF622
chr191963810919638178+3'-UTR,CDS,intron-Proximal3.305439.44064HepG2PPIG
chr191963851719638596+3'-UTR,CDS,intron-Proximal3.1996814.87095HepG2PPIG
chr191962709919627143+CDS,intron-Proximal3.1644514.84961K562DDX55
chr191963705619637069+3'-UTR,CDS3.002165.44739HepG2GRWD1
chr191964634419646484+CDS4.182795.60462HepG2PABPN1
chr191963703519637070+3'-UTR,CDS,intron-Proximal4.4816212.13906K562GRWD1
chr191963699419637056+CDS3.0830814.21230HepG2GRWD1
chr191962711819627142+CDS,intron-Proximal3.122705.21361K562APOBEC3C
chr191964620219646261+CDS,intron-Proximal3.173684.77136HepG2PPIG
chr191963813619638178+3'-UTR,CDS,intron-Proximal3.262398.87994K562GRWD1
chr191963698919637039+CDS,intron-Proximal3.7060628.47404K562RPS3
chr191963850819638556+3'-UTR,CDS,intron-Proximal3.9898114.72455K562PABPC4
chr191962711019627142+CDS,intron-Proximal3.3350212.36587HepG2GRWD1
chr191963854419638579+3'-UTR,CDS3.151944.68863K562SND1
chr191964588519645953+CDS4.343604.68902HepG2PPIG
chr191963699019637005+CDS,intron-Proximal4.4438246.03253K562PABPC4
chr191963808919638104+3'-UTR,CDS,intron-Proximal4.253404.39312K562APOBEC3C
chr191962704819627113+CDS3.720746.05537HepG2DDX3X
chr191963854719638580+3'-UTR,CDS,intron-Proximal3.6695014.81231K562UCHL5
chr191963811719638164+3'-UTR,CDS,intron-Proximal3.5822913.31121K562ZNF800
chr191963815219638232+3'-UTR,CDS,intron-Proximal3.8571816.42675HepG2PRPF8
chr191962711219627141+CDS5.1350625.08699K562PABPC4
chr191963703919637112+3'-UTR,CDS,intron-Proximal3.106257.12014K562AQR
chr191962704919627135+CDS3.2143830.99607K562ZNF622
chr191963891719638956+3'-UTR,CDS,intron-Distal,intron-Proximal3.7142222.55841HepG2LARP4
chr191963882219638889+3'-UTR,CDS,intron-Distal3.333245.62891K562SND1
chr191963964019639703+3'-UTR,5'-UTR,intron-Distal3.590089.54575HepG2CSTF2T
chr191964432419644471+intron-Distal3.958383.86715K562HNRNPK
chr191964393419644013+3'-UTR,intron-Distal5.195528.59041K562CSTF2T
chr191964296319643025+intron-Distal5.3544410.05561HepG2HNRNPK
chr191964085319640923+intron-Distal3.8009310.29116K562CSTF2T
chr191963893119638982+3'-UTR,CDS,intron-Distal,intron-Proximal4.0299013.44487HepG2RPS3
chr191964428919644465+intron-Distal4.1069212.33860HepG2HNRNPK
chr191963886419638911+3'-UTR,CDS,intron-Distal5.7797957.14117K562RPS3
chr191963881719638931+3'-UTR,CDS,intron-Distal,intron-Proximal5.2325633.05335HepG2RPS3
chr191964010319640174+CDS,intron-Distal,intron-Proximal3.314043.84691HepG2SF3B4
chr191964309019643121+intron-Distal3.493614.38107K562AQR
chr191964442019644503+intron-Distal7.0893227.73038HepG2PCBP2
chr191963987519640027+intron-Distal,intron-Proximal3.0606310.57007HepG2CSTF2T
chr191964572419645794+intron-Distal,intron-Proximal3.153256.19671HepG2HNRNPK
chr191964254919642567+intron-Distal4.170457.58805HepG2HNRNPC
chr191963837019638471+intron-Distal,intron-Proximal3.944409.88830HepG2SF3B4
chr191963900619639080+3'-UTR,intron-Distal,intron-Proximal,polyA_site4.2632516.61957K562CSTF2T
chr191964083819640898+intron-Distal3.999424.66211HepG2XRN2
chr191963952919639596+3'-UTR,intron-Distal4.189403.76710K562NONO
chr191963839819638491+intron-Distal,intron-Proximal3.229867.52067K562EFTUD2
chr191964011419640215+CDS,intron-Distal,intron-Proximal3.488907.32269HepG2CSTF2T
chr191963948819639580+3'-UTR,intron-Distal3.105805.03948K562CSTF2T
chr191964028619640435+CDS,intron-Distal,intron-Proximal3.240669.77304K562CSTF2T
chr191964296619643084+intron-Distal5.192356.52680K562HNRNPK
chr191964567319645724+intron-Distal3.203583.84715HepG2HNRNPK
chr191964059819640672+intron-Distal3.9063312.26550K562CSTF2T
chr191964390919643972+3'-UTR,intron-Distal,intron-Proximal3.453163.05161HepG2PPIG
chr191963900419639073+3'-UTR,intron-Distal,intron-Proximal,polyA_site4.4642710.94818K562FMR1
chr191963892419638989+3'-UTR,CDS,intron-Distal,intron-Proximal4.1371435.88492K562PABPC4
chr191964425219644436+3'-UTR,intron-Distal4.2130516.15057K562PCBP1
chr191964307719643090+intron-Distal3.992113.04871K562AQR
chr191964337019643431+intron-Distal,intron-Proximal3.5695910.59645HepG2SF3B4
chr191964476219644872+intron-Distal3.314725.07930K562LSM11
chr191963881519638847+3'-UTR,CDS,intron-Distal,intron-Proximal3.9843813.26557K562PABPC4
chr191963881519638862+3'-UTR,CDS,intron-Distal,intron-Proximal3.0958011.66021K562UCHL5
chr191963987619640024+intron-Distal,intron-Proximal3.8209319.09337K562CSTF2T
chr191964550319645578+intron-Distal5.073828.86792K562CSTF2T
chr191963970819639748+3'-UTR,5'-UTR,CDS,intron-Distal3.247833.69530HepG2CSTF2T
chr191963892419638990+3'-UTR,CDS,intron-Distal,intron-Proximal5.0694543.72714K562RPS3
chr191964481019644866+intron-Distal3.710254.12081K562DDX51
chr191964392619644002+3'-UTR,intron-Distal3.134404.88713HepG2CSTF2T
chr191963881519638986+3'-UTR,CDS,intron-Distal,intron-Proximal3.3324512.03159K562APOBEC3C
chr191964347619643539+3'-UTR,CDS,intron-Distal4.466805.18300K562SRSF1
chr191963881519638880+3'-UTR,CDS,intron-Distal,intron-Proximal5.1787726.17545HepG2LARP4
chr191964061219640690+intron-Distal3.192315.12571HepG2CSTF2T
chr191963989119639958+intron-Distal,intron-Proximal4.655234.23759K562NONO
chr191964439119644450+intron-Distal3.240154.88713HepG2CSTF2T
chr191964256819642604+intron-Distal4.207877.78787HepG2HNRNPC
chr191963966219639726+3'-UTR,5'-UTR,intron-Distal4.483594.27047K562AKAP8L
chr191963881519638830+3'-UTR,CDS,intron-Distal,intron-Proximal3.9537518.12601K562RPS3
chr191964449919644522+intron-Distal3.805263.42844K562KHSRP
chr191964348519643548+3'-UTR,CDS,intron-Distal3.352733.47879HepG2PPIG
chr191963942219639476+3'-UTR,intron-Distal3.693794.60046HepG2CSTF2T
chr191964452919644594+intron-Distal3.277435.80077K562CSTF2T
chr191963989319640005+intron-Distal,intron-Proximal3.259805.64919HepG2XRN2
chr191963893719638990+3'-UTR,intron-Distal,intron-Proximal3.591277.84934K562LARP4
chr191963943019639488+3'-UTR,intron-Distal3.492746.87667K562CSTF2T
chr191964031819640364+CDS,intron-Distal,intron-Proximal3.131613.49516HepG2CSTF2T
chr191964573819645836+intron-Distal,intron-Proximal3.903247.43453HepG2SF3A3
chr191964426919644420+3'-UTR,intron-Distal6.6044850.34459HepG2PCBP2
chr191963895619638988+3'-UTR,intron-Distal,intron-Proximal4.2653616.80388HepG2LARP4
chr191964069519640776+intron-Distal4.1633413.03519K562CSTF2T
chr191963837819638493+intron-Distal,intron-Proximal3.735127.11814HepG2PRPF4
chr191963884719638924+3'-UTR,CDS,intron-Distal3.271188.39062K562PABPC4
chr191964439519644475+intron-Distal3.481367.30652K562ILF3
chr191963827019638305+intron-Distal,intron-Proximal3.153153.15454HepG2EFTUD2
chr191964083719640929+intron-Distal3.185066.35020HepG2CSTF2T
chr191963883019638864+3'-UTR,CDS,intron-Distal4.7594727.50611K562RPS3
chr191963964419639709+3'-UTR,5'-UTR,intron-Distal3.8353210.72633K562CSTF2T
chr191964186219641954+intron-Distal3.122375.14461HepG2HNRNPK
chr191963988919639968+intron-Distal,intron-Proximal4.323493.26683HepG2FASTKD2
chr191964474919644877+intron-Distal4.9165016.02318K562CSTF2T
chr191964433719644395+intron-Distal3.390583.59765K562ILF3
chr191963695219636980+CDS,intron-Proximal4.189817.96821HepG2SF3B4
chr191963843219638489+intron-Proximal4.326244.28193HepG2AQR
chr191963803619638085+intron-Proximal3.608204.64775K562SF3B4
chr191962714319627189+intron-Proximal5.371336.75320K562AQR
chr191964576119645827+intron-Proximal5.167748.37417HepG2SF3B4
chr191963843219638496+intron-Proximal3.582409.06608K562AQR
chr191963803219638087+intron-Proximal6.3744616.74423HepG2SF3B4
chr191963841819638493+intron-Proximal3.451127.67315K562BUD13
chr191963817219638204+3'-UTR,intron-Proximal3.9676611.89449K562AQR
chr191962718719627241+intron-Proximal4.553146.80961HepG2EFTUD2
chr191963820419638251+intron-Proximal4.684658.08215HepG2EFTUD2
chr191963694419636952+CDS,intron-Proximal3.989506.74156HepG2SF3B4
chr191963819419638225+intron-Proximal4.615234.28841HepG2BUD13
chr191963842619638448+intron-Proximal3.967087.49660K562SF3B4
chr191963820119638234+intron-Proximal3.491343.68471HepG2BCLAF1
chr191963819519638215+intron-Proximal3.590124.13746HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTC-260F20.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTC-260F20.3 is not available on ENCORE database.

  • 19 RBPs can affect the levels of CTC-260F20.3.  








The Knockdown/knockout RNA-Seq assay for CTC-260F20.3 is not available on ENCORE database.





19 RBPs can affect the gene expression of CTC-260F20.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTC-260F20.3ENSG00000258674.530.856007.942401.957802.202401.51200HepG2FIP1L1
CTC-260F20.3ENSG00000258674.524.056405.896902.028302.516101.87980HepG2G3BP1
CTC-260F20.3ENSG00000258674.59.753100.602504.016802.130801.34980HepG2GEMIN5
CTC-260F20.3ENSG00000258674.524.693408.648701.513502.001101.47190HepG2PCBP1
CTC-260F20.3ENSG00000258674.550.3451019.288101.384002.823602.30150HepG2RBM22
CTC-260F20.3ENSG00000258674.512.956600.657204.301102.736802.12450HepG2RPS19
CTC-260F20.3ENSG00000258674.549.0626021.783301.171302.154101.69470HepG2SRFBP1
CTC-260F20.3ENSG00000258674.523.718006.147401.947801.842701.31750HepG2SRSF5
CTC-260F20.3ENSG00000258674.530.699107.782201.979803.564002.95500HepG2SRSF9
CTC-260F20.3ENSG00000258674.526.653708.590601.633402.197401.74170HepG2TIAL1
CTC-260F20.3ENSG00000258674.517.534602.019703.117902.798602.03430HepG2UCHL5
CTC-260F20.3ENSG00000258674.522.9745051.22000-1.156702.501401.67340K562DKC1
CTC-260F20.3ENSG00000258674.547.124908.122302.536406.130704.91870K562EIF4A3
CTC-260F20.3ENSG00000258674.561.011309.138302.739007.609106.66550K562HNRNPC
CTC-260F20.3ENSG00000258674.521.3071050.51120-1.245302.414001.65070K562KIF1C
CTC-260F20.3ENSG00000258674.523.620805.782902.030102.773501.93250K562RBM22
CTC-260F20.3ENSG00000258674.523.237505.917401.973302.332601.67600K562SRSF1
CTC-260F20.3ENSG00000258674.525.362205.986902.082702.922102.19510K562TARDBP
CTC-260F20.3ENSG00000258674.524.689405.775502.095802.768901.95110K562TIA1
CTC-260F20.3ENSG00000258674.545.4559020.784001.128902.021901.40200K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTC-260F20.3 is not available on ENCORE database.





1 RBPs can affect the splicing of CTC-260F20.3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECTC-260F20.3ENSG00000258674.5chr19+1963881519638925196393641963949519638509196385791964017219640326-0.056000.000010.000392includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTC-260F20.3 is not avaliable on ENCORE database.