CSAG1

General Information

Gene Name       : CSAG1
Gene ID             : ENSG00000198930.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CSAG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSAG1ENSG00000198930.120.000.000.00ENCSR000AEF
HepG2CSAG1ENSG00000198930.120.000.000.00ENCSR985KAT
K562CSAG1ENSG00000198930.1264.8778.6071.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CSAG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CSAG1 RNA is bound by 7 proteins.  







eCLIP assay for CSAG1 is not avaliable on ENCORE database.





7 proteins are bound to CSAG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX151909282151909290+3'-UTR6.7852530.12734K562YBX3
chrX151909215151909253+3'-UTR4.1915910.95929K562YBX3
chrX151909267151909282+3'-UTR6.1982234.06648K562YBX3
chrX151909365151909392+3'-UTR3.7195911.71300K562YBX3
chrX151908913151908928+3'-UTR,CDS4.647805.82137K562YBX3
chrX151909295151909350+3'-UTR4.0744115.09148K562YBX3
chrX151909290151909295+3'-UTR5.3039817.43234K562YBX3
chrX151909253151909267+3'-UTR6.1812033.39599K562YBX3
chrX151908896151908913+3'-UTR,CDS3.817455.95764K562YBX3
chrX151908746151908828+CDS,intron-Proximal4.060869.59600K562AQR
chrX151903380151903470+intron-Distal,intron-Proximal7.0016715.86009K562EFTUD2
chrX151906138151906218+intron-Distal3.803353.37809K562HNRNPL
chrX151903373151903448+intron-Distal,intron-Proximal4.067423.31153K562GTF2F1
chrX151904529151904646+intron-Distal,intron-Proximal3.551787.64049K562KHSRP
chrX151903499151903653+intron-Distal,intron-Proximal4.015399.48359K562PRPF8
chrX151903393151903485+intron-Distal,intron-Proximal5.070217.96842K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CSAG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CSAG1 is not available on ENCORE database.

  • 31 RBPs can affect the levels of CSAG1.  








The Knockdown/knockout RNA-Seq assay for CSAG1 is not available on ENCORE database.





31 RBPs can affect the gene expression of CSAG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CSAG1ENSG00000198930.81624.618201083.982000.5837011.8230010.74250K562AGGF1
CSAG1ENSG00000198930.81617.290401191.176200.441104.634403.28200K562AKAP8
CSAG1ENSG00000198930.81723.668001127.943200.611704.181403.37570K562AKAP8L
CSAG1ENSG00000198930.81478.73120766.008900.9488014.9094013.69870K562AQR
CSAG1ENSG00000198930.81545.229401183.504300.384704.905603.65170K562ATP5C1
CSAG1ENSG00000198930.81604.028801295.382800.308203.072401.82100K562CCDC124
CSAG1ENSG00000198930.81568.520201292.163400.279502.273301.55580K562CPSF6
CSAG1ENSG00000198930.81501.056701213.679900.306503.540202.53210K562DKC1
CSAG1ENSG00000198930.81558.29850997.595300.643307.953906.44170K562FIP1L1
CSAG1ENSG00000198930.81653.103801314.772100.330302.455401.64870K562FMR1
CSAG1ENSG00000198930.81437.03530941.094000.610607.416506.16400K562GRSF1
CSAG1ENSG00000198930.81887.972201166.512500.694503.115601.79850K562HNRNPA2B1
CSAG1ENSG00000198930.81083.80220820.474300.401502.551001.65980K562HNRNPM
CSAG1ENSG00000198930.81826.120101196.991800.609309.377207.61630K562KIF1C
CSAG1ENSG00000198930.81445.852201053.443700.456702.904101.94390K562KRR1
CSAG1ENSG00000198930.81784.142001145.846400.638703.744702.42640K562MAK16
CSAG1ENSG00000198930.81779.637301340.938400.408202.813101.89490K562MBNL1
CSAG1ENSG00000198930.81710.59300939.904000.863809.090307.13130K562NAA15
CSAG1ENSG00000198930.81136.87920929.379800.290603.420502.59990K562NSUN2
CSAG1ENSG00000198930.82115.174101020.225901.051804.544103.18880K562PABPN1
CSAG1ENSG00000198930.81430.708401132.378500.337302.380101.62130K562PPIG
CSAG1ENSG00000198930.8521.10890372.055200.486002.792902.03980K562PRPF8
CSAG1ENSG00000198930.82644.720001118.533001.241408.766807.84860K562PUS1
CSAG1ENSG00000198930.81926.784501089.905800.8219013.6473012.32450K562RBM15
CSAG1ENSG00000198930.81138.30560917.007400.311802.918302.08340K562SF3A3
CSAG1ENSG00000198930.81886.326401071.552800.815803.503902.06540K562SNRNP200
CSAG1ENSG00000198930.8618.56030464.064800.414502.605901.62070K562SRFBP1
CSAG1ENSG00000198930.8684.55270516.026400.407602.403601.53510K562TIAL1
CSAG1ENSG00000198930.8710.04060548.260000.372902.406701.53430K562TRIM56
CSAG1ENSG00000198930.81235.89000985.438300.326603.820102.98800K562UPF1
CSAG1ENSG00000198930.81060.42940843.213100.330602.589401.74080K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CSAG1 is not available on ENCORE database.





26 RBPs can affect the splicing of CSAG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECSAG1ENSG00000198930.8chrX+1519037261519039381519032711519032951519044581519045180.070000.000000.00000includedK562SRSF1
SECSAG1ENSG00000198930.8chrX+151908777151908979151904458151904518151909138151909518-0.068000.000610.07663excludedK562DROSHA
SECSAG1ENSG00000198930.8chrX+151908777151908979151904458151904518151909138151909518-0.200000.000800.04360excludedK562EFTUD2
SECSAG1ENSG00000198930.8chrX+1519037261519039381519032711519032951519044581519045180.057000.000060.01778includedK562UPF1
SECSAG1ENSG00000198930.8chrX+151908770151908928151904458151904518151909138151909518-0.119000.002860.08279excludedK562TARDBP
SECSAG1ENSG00000198930.8chrX+1519087701519089281519044581519045181519091381519095180.058000.000520.05567includedK562CPSF6
SECSAG1ENSG00000198930.8chrX+1519037261519039381519032711519032951519044581519045180.078000.000060.08240includedK562DDX55
SECSAG1ENSG00000198930.8chrX+151908777151908928151904458151904518151909138151909518-0.107000.000080.02519excludedK562SAFB
SECSAG1ENSG00000198930.8chrX+151908770151908928151904458151904518151909138151909518-0.199000.000390.06403excludedK562EIF3G
A5SSCSAG1ENSG00000198930.8chrX+1519087771519089791519087771519089281519091381519095180.269000.000000.00000longerK562AQR
A5SSCSAG1ENSG00000198930.8chrX+1519088101519089791519088101519089281519091381519095150.247000.000000.00069longerK562HNRNPK
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.232000.001940.03052includedK562SF3B4
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089281519091381519095180.095000.001610.01140includedK562PUS1
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.308000.000090.00380includedK562HNRNPC
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.136000.000620.04314includedK562EIF4G2
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.216000.000130.02295includedK562PCBP1
RICSAG1ENSG00000198930.8chrX+151908777151909518151908777151908928151909138151909518-0.103000.003510.06471excludedK562SRSF1
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.138000.003660.09196includedK562HNRNPUL1
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.189000.001470.08392includedK562PHF6
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089281519091381519095180.238000.000000.00033includedK562HNRNPK
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.355000.000100.00209includedK562PRPF8
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089281519091381519095180.083000.006530.05481includedK562AKAP8L
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.184000.001670.01964includedK562RBM15
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.335000.000030.00150includedK562U2AF1
RICSAG1ENSG00000198930.8chrX+151908777151909518151908777151908928151909138151909518-0.087000.001290.06092excludedK562SBDS
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.139000.000310.08159includedK562PUM2
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.152000.000350.00594includedK562UTP18
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.478000.000000.00006includedK562EFTUD2
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089281519091381519095180.351000.000000.00000includedK562AQR
RICSAG1ENSG00000198930.8chrX+1519087771519095181519087771519089791519091381519095180.269000.000110.00302includedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CSAG1 is not avaliable on ENCORE database.