CHURC1-FNTB

General Information

Gene Name : CHURC1-FNTB
Gene ID : ENSG00000125954.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHURC1-FNTB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHURC1-FNTB	ENSG00000125954.12	0.00	0.12	0.06	ENCSR000AEF
HepG2	CHURC1-FNTB	ENSG00000125954.12	2.98	0.00	1.49	ENCSR985KAT
K562	CHURC1-FNTB	ENSG00000125954.12	0.12	0.07	0.10	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHURC1-FNTB is not avaliable on ENCORE database.

Proteins bound to RNA

CHURC1-FNTB RNA is bound by 11 proteins.

eCLIP assay for CHURC1-FNTB is not avaliable on ENCORE database.

11 proteins are bound to CHURC1-FNTB RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	65479034	65479101	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.39869	4.67689	HepG2	PPIG
chr14	65507445	65507551	+	3'-UTR,CDS,intron-Proximal	4.03220	4.69223	K562	SF3B4
chr14	65499316	65499373	+	3'-UTR,CDS,intron-Proximal	4.29632	4.12401	HepG2	U2AF2
chr14	65398919	65399021	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.40142	12.22246	HepG2	LARP4
chr14	65398960	65399016	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	5.34097	6.79809	K562	PABPC4
chr14	65390708	65390795	+	5'-UTR,CDS,intron-Proximal	3.52880	6.07797	HepG2	LARP4
chr14	65390706	65390735	+	5'-UTR,CDS,intron-Proximal	5.21844	6.73016	HepG2	SUB1
chr14	65390749	65390848	+	5'-UTR,CDS,intron-Proximal	3.04514	6.80151	HepG2	BCLAF1
chr14	65392727	65392777	+	CDS,intron-Distal,intron-Proximal	4.17384	6.22576	HepG2	BCLAF1
chr14	65398851	65398919	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12926	8.24214	HepG2	LARP4
chr14	65390761	65390845	+	5'-UTR,CDS,intron-Proximal	3.00904	5.21580	K562	GRWD1
chr14	65390735	65390795	+	5'-UTR,CDS	5.90150	11.21418	HepG2	SUB1
chr14	65381190	65381259	+	5'-UTR,CDS,intron-Proximal	3.30532	3.61259	K562	ZNF622
chr14	65390708	65390734	+	5'-UTR,CDS,intron-Proximal	4.50063	8.37824	K562	DDX3X
chr14	65390730	65390845	+	5'-UTR,CDS,intron-Proximal	4.15935	5.97027	HepG2	GRWD1
chr14	65381198	65381255	+	5'-UTR,CDS,intron-Proximal	5.08612	12.39466	HepG2	SUB1
chr14	65392727	65392771	+	CDS,intron-Distal,intron-Proximal	4.70087	4.89487	HepG2	LARP4
chr14	65392725	65392776	+	CDS,intron-Distal,intron-Proximal	5.15421	5.61461	HepG2	SUB1
chr14	65381168	65381254	+	5'-UTR,CDS,intron-Proximal	4.99156	20.22714	K562	DDX3X
chr14	65381199	65381285	+	5'-UTR,CDS,intron-Proximal	4.57018	4.69071	HepG2	GRWD1
chr14	65472248	65472310	+	intron-Distal	3.66078	10.20091	HepG2	PTBP1
chr14	65472266	65472374	+	intron-Distal	6.26696	15.10895	K562	PTBP1
chr14	65396043	65396124	+	intron-Distal	5.52710	7.91717	K562	PTBP1
chr14	65395362	65395429	+	intron-Distal	5.05164	5.89856	K562	PTBP1
chr14	65395738	65395772	+	intron-Distal	3.46184	3.27944	K562	PTBP1
chr14	65396041	65396138	+	intron-Distal	3.83606	3.59803	HepG2	PTBP1
chr14	65472310	65472359	+	intron-Distal	5.03330	13.26087	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CHURC1-FNTB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHURC1-FNTB is not available on ENCORE database.
32 RBPs can affect the levels of CHURC1-FNTB.

The Knockdown/knockout RNA-Seq assay for CHURC1-FNTB is not available on ENCORE database.

32 RBPs can affect the gene expression of CHURC1-FNTB :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHURC1-FNTB	ENSG00000125954.8	15.78040	1.09400	3.85030	2.46060	1.73230	HepG2	AKAP8L
CHURC1-FNTB	ENSG00000125954.8	16.95630	1.08810	3.96180	3.79470	3.03810	HepG2	CKAP4
CHURC1-FNTB	ENSG00000125954.8	18.27530	3.20790	2.51010	2.18900	1.54060	HepG2	IGF2BP1
CHURC1-FNTB	ENSG00000125954.8	13.00330	0.99580	3.70670	2.93880	1.89340	HepG2	KIF1C
CHURC1-FNTB	ENSG00000125954.8	9.99350	0.00000	99999.99990	3.11340	1.61200	HepG2	NIP7
CHURC1-FNTB	ENSG00000125954.8	0.00000	19.24270	-99999.99999	1.98170	1.52380	HepG2	RBM22
CHURC1-FNTB	ENSG00000125954.8	0.00000	13.94430	-99999.99999	2.00350	1.45780	HepG2	SUCLG1
CHURC1-FNTB	ENSG00000125954.8	0.89510	12.60480	-3.81570	1.74770	1.33090	HepG2	TIAL1
CHURC1-FNTB	ENSG00000125954.8	2.07230	25.35090	-3.61270	4.27580	3.50410	HepG2	U2AF1
CHURC1-FNTB	ENSG00000125954.8	7.35500	0.00000	99999.99990	2.44270	1.72940	HepG2	UCHL5
CHURC1-FNTB	ENSG00000125954.8	75.90010	31.85960	1.25230	3.30630	2.69600	K562	AGGF1
CHURC1-FNTB	ENSG00000125954.8	1.43550	34.36820	-4.58140	2.43870	1.52450	K562	CELF1
CHURC1-FNTB	ENSG00000125954.8	2.21340	35.77780	-4.01480	8.30970	7.25990	K562	DDX47
CHURC1-FNTB	ENSG00000125954.8	0.91490	27.89870	-4.93040	2.18050	1.34180	K562	EIF4G2
CHURC1-FNTB	ENSG00000125954.8	63.49770	28.27480	1.16710	2.87980	2.01340	K562	FIP1L1
CHURC1-FNTB	ENSG00000125954.8	0.00000	10.84690	-99999.99999	3.26900	1.68400	K562	G3BP1
CHURC1-FNTB	ENSG00000125954.8	18.93700	0.68640	4.78600	2.20870	1.52920	K562	GRSF1
CHURC1-FNTB	ENSG00000125954.8	32.08770	3.98980	3.00750	3.87280	2.81170	K562	HNRNPU
CHURC1-FNTB	ENSG00000125954.8	97.52010	38.33500	1.34690	3.85190	2.91630	K562	HSPD1
CHURC1-FNTB	ENSG00000125954.8	77.36400	32.09700	1.26910	3.77800	2.79750	K562	PPIG
CHURC1-FNTB	ENSG00000125954.8	1.82410	14.31660	-2.97250	2.18430	1.51350	K562	PRPF8
CHURC1-FNTB	ENSG00000125954.8	15.45700	0.65310	4.56470	2.99800	1.32460	K562	RBM17
CHURC1-FNTB	ENSG00000125954.8	1.32130	14.64450	-3.47030	2.63870	1.34360	K562	RRP9
CHURC1-FNTB	ENSG00000125954.8	0.42450	14.28830	-5.07300	3.70080	1.77330	K562	SRP68
CHURC1-FNTB	ENSG00000125954.8	9.56870	37.09880	-1.95500	2.74820	1.39620	K562	SSRP1
CHURC1-FNTB	ENSG00000125954.8	0.00000	13.87210	-99999.99999	4.09230	2.83680	K562	SUPV3L1
CHURC1-FNTB	ENSG00000125954.8	0.00000	16.28140	-99999.99999	4.62330	2.55590	K562	TAF15
CHURC1-FNTB	ENSG00000125954.8	3.42130	16.60960	-2.27940	2.24130	1.51950	K562	U2AF2
CHURC1-FNTB	ENSG00000125954.8	0.00000	14.67660	-99999.99999	4.52180	3.18840	K562	UCHL5
CHURC1-FNTB	ENSG00000125954.8	0.39030	11.68330	-4.90370	3.07510	2.31920	K562	UPF1
CHURC1-FNTB	ENSG00000125954.8	4.61070	30.92790	-2.74580	4.53820	2.99240	K562	UTP3
CHURC1-FNTB	ENSG00000125954.8	0.00000	10.39490	-99999.99999	3.32660	2.40670	K562	WDR43
CHURC1-FNTB	ENSG00000125954.8	0.42470	14.93660	-5.13640	4.04660	2.47570	K562	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHURC1-FNTB is not available on ENCORE database.

11 RBPs can affect the splicing of CHURC1-FNTB :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	-0.28900	0.00062	0.01413	excluded	K562	SRSF1
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65392724	65392798	65390753	65390844	65398855	65399010	-0.10800	0.00305	0.05061	excluded	K562	SF3B4
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	-0.22600	0.00562	0.08303	excluded	HepG2	U2AF1
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	-0.48900	0.00101	0.03995	excluded	K562	FXR1
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	-0.51200	0.00040	0.06040	excluded	K562	DROSHA
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	0.25800	0.00085	0.06640	included	HepG2	DDX6
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	0.21600	0.00002	0.00287	included	HepG2	HNRNPL
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	0.19200	0.00011	0.03623	included	HepG2	NOL12
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	0.49200	0.00589	0.08198	included	K562	U2AF2
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	0.47500	0.00265	0.05680	included	K562	RBM15
SE	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65499076	65499221	65494415	65494499	65499327	65499414	0.25100	0.00030	0.02455	included	HepG2	SRSF9
A3SS	CHURC1-FNTB	ENSG00000125954.8	chr14	+	65390708	65390844	65390754	65390844	65381210	65381252	-0.09700	0.00154	0.03789	shorter	HepG2	U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHURC1-FNTB

General Information

Functions

Localization

Domains (AlphaFold: CHURC1-FNTB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHURC1-FNTB is not avaliable on ENCORE database.

11 proteins are bound to CHURC1-FNTB RNA:

eCLIP assay for CHURC1-FNTB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHURC1-FNTB is not available on ENCORE database.

32 RBPs can affect the gene expression of CHURC1-FNTB :

The Knockdown/knockout RNA-Seq assay for CHURC1-FNTB is not available on ENCORE database.

11 RBPs can affect the splicing of CHURC1-FNTB :

The Knockdown/knockout RNA-Seq assay for CHURC1-FNTB is not avaliable on ENCORE database.