CHCHD1

General Information

Gene Name       : CHCHD1
Gene ID             : ENSG00000172586.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CHCHD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHCHD1ENSG00000172586.715.9828.8622.42ENCSR000AEF
HepG2CHCHD1ENSG00000172586.735.4431.1833.31ENCSR985KAT
K562CHCHD1ENSG00000172586.754.1540.0247.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHCHD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHCHD1 RNA is bound by 12 proteins.  







eCLIP assay for CHCHD1 is not avaliable on ENCORE database.





12 proteins are bound to CHCHD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr107554297075543067+3'-UTR4.329537.73571HepG2LARP4
chr107554289675542952+3'-UTR,CDS5.4513062.27390K562PABPC4
chr107554281175542893+3'-UTR,CDS,intron-Proximal4.344634.95909K562BUD13
chr107554297175543018+3'-UTR5.3621816.66765K562PABPC4
chr107554328575543387+3'-UTR6.6937610.02027K562PUM2
chr107554279975542862+3'-UTR,CDS,intron-Proximal5.804369.95272K562AQR
chr107554182075541892+5'-UTR,CDS5.472486.00761K562DROSHA
chr107554182775541897+5'-UTR,CDS5.034599.09300HepG2DDX3X
chr107554181375541902+5'-UTR,CDS3.636504.40704K562EIF3G
chr107554182075541868+5'-UTR,CDS5.7977245.36451K562DDX3X
chr107554182275541958+5'-UTR,CDS,intron-Proximal4.519159.88251K562GEMIN5
chr107554186875541911+CDS5.4654854.86700K562DDX3X
chr107554219875542241+CDS,intron-Proximal5.4211014.28850K562AQR
chr107554195475541958+CDS,intron-Proximal6.0993420.46868K562LIN28B
chr107554193175541954+CDS6.4988828.16459K562LIN28B
chr107554189675541931+CDS6.1759222.81538K562LIN28B
chr107554191475541964+CDS,intron-Proximal4.611966.07680HepG2LIN28B
chr107554216975542202+CDS,intron-Proximal4.269744.60160HepG2LARP4
chr107554207475542198+CDS,intron-Proximal4.052916.88279HepG2LIN28B
chr107554218075542246+CDS,intron-Proximal4.100035.64484HepG2PRPF8
chr107554191575541956+CDS3.6722818.85949K562DDX3X
chr107554193075541949+CDS3.0673911.97106K562YBX3
chr107554191375541930+CDS3.1743311.76100K562YBX3
chr107554207975542097+CDS,intron-Proximal5.7076415.71422K562LIN28B
chr107554209875542145+CDS3.8158211.20638K562LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHCHD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHCHD1 is not available on ENCORE database.

  • 51 RBPs can affect the levels of CHCHD1.  








The Knockdown/knockout RNA-Seq assay for CHCHD1 is not available on ENCORE database.





51 RBPs can affect the gene expression of CHCHD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHCHD1ENSG00000172586.7416.67830593.69560-0.510804.730203.87320HepG2AUH
CHCHD1ENSG00000172586.7161.73610235.56850-0.542502.284001.73490HepG2BOP1
CHCHD1ENSG00000172586.7148.71990216.26580-0.540202.054201.45130HepG2CPSF6
CHCHD1ENSG00000172586.7153.49760245.58540-0.678002.369001.46430HepG2DDX59
CHCHD1ENSG00000172586.7351.04710532.62530-0.601503.698402.96290HepG2EIF4A3
CHCHD1ENSG00000172586.7320.78630518.54950-0.692903.821003.01720HepG2EIF4B
CHCHD1ENSG00000172586.7322.30200485.99090-0.592504.117703.13460HepG2EIF4G2
CHCHD1ENSG00000172586.7399.79780681.64640-0.7698010.398609.35460HepG2ETF1
CHCHD1ENSG00000172586.7342.73300498.49130-0.540503.187102.47550HepG2G3BP1
CHCHD1ENSG00000172586.7376.66210529.17320-0.490502.869701.95850HepG2G3BP2
CHCHD1ENSG00000172586.7332.56510506.71610-0.607503.436602.69220HepG2IGF2BP2
CHCHD1ENSG00000172586.7275.85280210.629400.389102.062101.41840HepG2ILF2
CHCHD1ENSG00000172586.7364.96310509.64990-0.481802.251901.36000HepG2KHSRP
CHCHD1ENSG00000172586.7424.47800553.28510-0.382301.853801.32860HepG2NCBP2
CHCHD1ENSG00000172586.7386.84500493.01510-0.349902.305401.74120HepG2PCBP1
CHCHD1ENSG00000172586.7308.52630501.68450-0.701407.146306.34690HepG2PTBP1
CHCHD1ENSG00000172586.7329.75980486.76530-0.561804.041003.33540HepG2PUF60
CHCHD1ENSG00000172586.7387.74650516.72200-0.414303.562102.90650HepG2PUM1
CHCHD1ENSG00000172586.7397.39430516.34510-0.377802.350901.73110HepG2PUM2
CHCHD1ENSG00000172586.7431.78790543.28730-0.331401.920101.38510HepG2QKI
CHCHD1ENSG00000172586.7395.67630266.736600.568802.051801.43640HepG2RAVER1
CHCHD1ENSG00000172586.7331.96130493.08680-0.570804.172503.35960HepG2RBM25
CHCHD1ENSG00000172586.7372.43090558.30740-0.584105.340304.62830HepG2NELFE
CHCHD1ENSG00000172586.7361.93620520.02240-0.522804.340703.59190HepG2RECQL
CHCHD1ENSG00000172586.7148.76550231.57370-0.638402.741202.03810HepG2SF3B1
CHCHD1ENSG00000172586.7313.37520522.27670-0.736907.682506.77530HepG2SF3B4
CHCHD1ENSG00000172586.7357.65090466.73030-0.384002.780702.07740HepG2SLBP
CHCHD1ENSG00000172586.7482.44410643.48670-0.415503.567003.02010HepG2SRFBP1
CHCHD1ENSG00000172586.7375.31820480.60880-0.356702.350001.76710HepG2SRSF5
CHCHD1ENSG00000172586.7341.59430443.53200-0.376802.583702.04680HepG2SRSF9
CHCHD1ENSG00000172586.7275.24640490.05890-0.832208.614807.71480HepG2TAF15
CHCHD1ENSG00000172586.7345.70270450.24740-0.381202.253801.49710HepG2TIA1
CHCHD1ENSG00000172586.7358.94380475.54770-0.405802.367101.56470HepG2TUFM
CHCHD1ENSG00000172586.7264.51250182.802000.533002.829802.22730HepG2UTP3
CHCHD1ENSG00000172586.7410.63290300.388600.450902.066801.43160HepG2XRN2
CHCHD1ENSG00000172586.7876.55190527.216500.733308.405507.20530K562AKAP8L
CHCHD1ENSG00000172586.7291.95130413.82430-0.503303.105702.27380K562CPSF6
CHCHD1ENSG00000172586.7607.47890767.22710-0.336802.820502.16260K562DDX47
CHCHD1ENSG00000172586.7156.47560270.97050-0.792203.112102.03800K562EIF3A
CHCHD1ENSG00000172586.7382.55540544.98730-0.510603.576502.64620K562EIF4A3
CHCHD1ENSG00000172586.7299.13160421.02870-0.493102.742801.89280K562FMR1
CHCHD1ENSG00000172586.71374.684401037.675100.405603.911703.01650K562GRSF1
CHCHD1ENSG00000172586.7606.12110793.95750-0.389503.087701.95240K562HNRNPA1
CHCHD1ENSG00000172586.7257.33980425.72560-0.726205.488504.67610K562HNRNPC
CHCHD1ENSG00000172586.7574.75890415.017800.469702.690501.77370K562HNRNPM
CHCHD1ENSG00000172586.7828.87150559.522400.566901.996001.30400K562KIF1C
CHCHD1ENSG00000172586.7713.64980439.343300.699804.745203.49130K562NAA15
CHCHD1ENSG00000172586.7745.31220572.789200.379702.508501.73200K562PPIG
CHCHD1ENSG00000172586.7762.62400471.242300.694406.461105.31350K562PRPF8
CHCHD1ENSG00000172586.71273.95530522.882601.2847023.2489021.69290K562PUS1
CHCHD1ENSG00000172586.7806.59720509.446700.662808.166307.17660K562RBM15
CHCHD1ENSG00000172586.7953.43320671.257500.506205.090204.13490K562SRSF1
CHCHD1ENSG00000172586.7238.80600381.98500-0.677702.798201.32530K562TAF15
CHCHD1ENSG00000172586.7443.31270630.62840-0.508505.123304.17680K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHCHD1 is not available on ENCORE database.





1 RBPs can affect the splicing of CHCHD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSCHCHD1ENSG00000172586.7chr10+7554208075542305755420807554219975542831755434100.058000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHCHD1 is not avaliable on ENCORE database.