CCDC101

General Information

Gene Name       : CCDC101
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC101)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC101 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC101 RNA is bound by 5 proteins.  







eCLIP assay for CCDC101 is not avaliable on ENCORE database.





5 proteins are bound to CCDC101 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162860211828602147+CDS,intron-Proximal4.014124.31428K562YBX3
chr162859701128597080+CDS,intron-Proximal4.2059011.57027HepG2PRPF8
chr162860039628600452+CDS,intron-Proximal4.499144.64001HepG2U2AF2
chr162859697128597041+CDS4.366865.82137K562YBX3
chr162856558928565704+intron-Distal3.190893.48399HepG2CSTF2T
chr162860282728602895+intron-Proximal4.091263.74254HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC101 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC101 is not available on ENCORE database.

  • 37 RBPs can affect the levels of CCDC101.  








The Knockdown/knockout RNA-Seq assay for CCDC101 is not available on ENCORE database.





37 RBPs can affect the gene expression of CCDC101 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC101ENSG00000176476.4223.05650134.437100.730403.661502.53410HepG2ADAR
CCDC101ENSG00000176476.4203.31700137.865600.560402.553101.57870HepG2YBX3
CCDC101ENSG00000176476.4195.91210293.65170-0.583902.075901.40480HepG2FIP1L1
CCDC101ENSG00000176476.4271.92540196.444300.469002.614401.95870HepG2HNRNPL
CCDC101ENSG00000176476.4218.59650151.012000.533502.777302.16830HepG2HNRNPU
CCDC101ENSG00000176476.4234.11300154.253300.601803.596202.77030HepG2ILF2
CCDC101ENSG00000176476.4167.46310237.53580-0.504302.329201.58370HepG2MSI2
CCDC101ENSG00000176476.4210.96310287.09150-0.444502.279201.71790HepG2PCBP1
CCDC101ENSG00000176476.4245.26200134.690100.864606.092105.03070HepG2PPIL4
CCDC101ENSG00000176476.4171.02130292.14750-0.772503.877003.25360HepG2PTBP1
CCDC101ENSG00000176476.4312.08020216.544100.527202.955102.26140HepG2PUM2
CCDC101ENSG00000176476.4194.68020316.35780-0.700504.410203.64750HepG2QKI
CCDC101ENSG00000176476.4232.75000325.11450-0.482202.507401.98830HepG2NELFE
CCDC101ENSG00000176476.4219.51070317.45640-0.532302.920202.43800HepG2SRSF1
CCDC101ENSG00000176476.4156.44470258.28110-0.723304.844404.15200HepG2SRSF9
CCDC101ENSG00000176476.4194.43990285.38520-0.553602.924502.34980HepG2TAF15
CCDC101ENSG00000176476.4165.57070262.18450-0.663103.734502.77030HepG2TIA1
CCDC101ENSG00000176476.4261.84570146.725900.835505.558004.89750HepG2TIAL1
CCDC101ENSG00000176476.4465.83270251.127800.891306.503805.55730HepG2U2AF1
CCDC101ENSG00000176476.4203.10860271.85660-0.420602.182301.54980HepG2UPF1
CCDC101ENSG00000176476.4365.60020262.466100.478003.037002.41490HepG2UTP3
CCDC101ENSG00000176476.4260.20650146.659200.827103.634002.81270HepG2XRN2
CCDC101ENSG00000176476.4775.39560371.687401.0607020.3910018.77650K562DDX47
CCDC101ENSG00000176476.4309.96200197.128000.652902.366601.44280K562EIF3A
CCDC101ENSG00000176476.4189.27970116.408100.701203.558702.66230K562EIF3G
CCDC101ENSG00000176476.4292.50910212.270400.462502.258301.51430K562EIF4A3
CCDC101ENSG00000176476.427.7695090.70550-1.707706.168505.02030K562G3BP2
CCDC101ENSG00000176476.4584.49830407.214500.521303.587802.73170K562GRSF1
CCDC101ENSG00000176476.4434.93060322.464300.431502.893701.97940K562HNRNPU
CCDC101ENSG00000176476.4501.65680335.289600.581203.963403.01480K562HSPD1
CCDC101ENSG00000176476.4584.21960428.745900.446302.958902.00990K562MBNL1
CCDC101ENSG00000176476.4158.60970314.80950-0.989006.559705.27470K562PCBP3
CCDC101ENSG00000176476.4124.58510241.47130-0.954706.451005.23410K562POLR2G
CCDC101ENSG00000176476.4350.40200169.733901.045606.867405.56840K562RPS19
CCDC101ENSG00000176476.4301.39620215.151600.486202.369401.37230K562SAFB
CCDC101ENSG00000176476.4148.3483094.304100.653502.569901.74900K562SF3B4
CCDC101ENSG00000176476.4236.64020153.505500.624303.085602.34230K562SRSF1
CCDC101ENSG00000176476.4369.88170242.199700.610804.275103.24770K562SYNCRIP
CCDC101ENSG00000176476.4284.40890155.355200.872305.809504.75900K562TARDBP
CCDC101ENSG00000176476.4229.92710149.858300.617503.046102.17900K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC101 is not available on ENCORE database.





4 RBPs can affect the splicing of CCDC101 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC101ENSG00000176476.4chr16+2859993028600012285969682859704128600420286004850.114000.000190.02297includedK562XRCC6
SECCDC101ENSG00000176476.4chr16+2860236128602574286019202860225628602910286031090.425000.000000.00000includedHepG2HNRNPK
SECCDC101ENSG00000176476.4chr16+2858898928589067285652352856541828592375285924650.072000.000410.02130includedHepG2MATR3
SECCDC101ENSG00000176476.4chr16+2859993028600012285969682859704128600420286004850.159000.000540.01148includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC101 is not avaliable on ENCORE database.