TGM2

General Information

Gene Name : TGM2
Gene ID : ENSG00000198959.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TGM2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TGM2	ENSG00000198959.11	0.19	0.37	0.28	ENCSR000AEF
HepG2	TGM2	ENSG00000198959.11	35.36	13.10	24.23	ENCSR985KAT
K562	TGM2	ENSG00000198959.11	40.95	37.09	39.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TGM2 is not avaliable on ENCORE database.

Proteins bound to RNA

TGM2 RNA is bound by 16 proteins.

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eCLIP assay for TGM2 is not avaliable on ENCORE database.

16 proteins are bound to TGM2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	36757637	36757765	-	3'-UTR,intron-Distal	7.32273	121.43196	K562	UPF1
chr20	36757875	36757972	-	3'-UTR,intron-Distal	5.97532	73.50826	K562	UPF1
chr20	36757571	36757637	-	3'-UTR,intron-Distal	6.60234	72.15953	K562	UPF1
chr20	36757491	36757571	-	3'-UTR,intron-Distal	5.51476	71.66518	K562	UPF1
chr20	36757846	36757875	-	3'-UTR,intron-Distal	7.24185	69.01915	K562	UPF1
chr20	36757394	36757440	-	3'-UTR,intron-Distal	4.85146	56.36495	K562	UPF1
chr20	36757821	36757846	-	3'-UTR,intron-Distal	6.86048	55.15368	K562	UPF1
chr20	36757788	36757819	-	3'-UTR,intron-Distal	7.79330	53.52703	K562	UPF1
chr20	36758227	36758300	-	3'-UTR,intron-Distal,intron-Proximal	4.98592	50.10043	K562	UPF1
chr20	36758364	36758430	-	3'-UTR,intron-Distal	6.23780	50.04698	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 84 entries

eCLIP assay for TGM2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TGM2 is not available on ENCORE database.
175 RBPs can affect the levels of TGM2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TGM2 is not available on ENCORE database.

175 RBPs can affect the gene expression of TGM2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TGM2	ENSG00000198959.7	11107.80140	2080.30590	2.41660	208.40820	205.84530	HepG2	SRFBP1
TGM2	ENSG00000198959.7	4727.87880	1177.35250	2.00550	111.79120	108.35150	HepG2	RBM15
TGM2	ENSG00000198959.7	3884.47040	950.56710	2.03080	89.30860	86.21540	HepG2	MSI2
TGM2	ENSG00000198959.7	4840.36870	1919.28200	1.33450	79.50990	76.85310	HepG2	AUH
TGM2	ENSG00000198959.7	3035.97080	761.81170	1.99460	76.56970	72.98630	HepG2	AATF
TGM2	ENSG00000198959.7	1835.60270	573.04960	1.67940	68.17640	66.40980	HepG2	ZNF622
TGM2	ENSG00000198959.7	5451.54050	1175.03750	2.21390	67.38240	64.59750	HepG2	FIP1L1
TGM2	ENSG00000198959.7	3434.19660	1396.76930	1.29780	67.37580	64.45740	HepG2	PARN
TGM2	ENSG00000198959.7	5475.04890	1531.93200	1.83740	63.16070	60.93810	HepG2	SUCLG1
TGM2	ENSG00000198959.7	5333.07140	1340.40170	1.99220	60.43690	58.23860	HepG2	CELF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 210 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TGM2 is not available on ENCORE database.

16 RBPs can affect the splicing of TGM2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	0.24400	0.00001	0.00161	1included	HepG2	NOL12
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	-0.29300	0.00002	0.00139	2included	HepG2	TAF15
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	0.21800	0.00007	0.00335	1included	K562	TARDBP
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	0.22000	0.00022	0.01313	1included	K562	LIN28B
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	0.20200	0.00022	0.01989	1included	K562	TRA2A
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	0.21200	0.00022	0.00966	1included	HepG2	HNRNPU
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	-0.13200	0.00027	0.03186	2included	K562	PUM1
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	-0.16700	0.00028	0.05481	2included	K562	NCBP2
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	-0.16600	0.00040	0.01681	2included	K562	PPIL4
MXE	TGM2	ENSG00000198959.7	chr20	-	36784248	36784491	36789821	36790001	36779340	36779459	36793590	36793672	0.21600	0.00046	0.02750	1included	HepG2	XPO5

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TGM2

General Information

Functions

Localization

Domains (AlphaFold: TGM2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TGM2 is not avaliable on ENCORE database.

16 proteins are bound to TGM2 RNA:

eCLIP assay for TGM2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TGM2 is not available on ENCORE database.

175 RBPs can affect the gene expression of TGM2 :

The Knockdown/knockout RNA-Seq assay for TGM2 is not available on ENCORE database.

16 RBPs can affect the splicing of TGM2 :

The Knockdown/knockout RNA-Seq assay for TGM2 is not avaliable on ENCORE database.