SOD2

General Information

Gene Name : SOD2
Gene ID : ENSG00000112096.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SOD2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SOD2	ENSG00000112096.17	27.90	22.68	25.29	ENCSR000AEF
HepG2	SOD2	ENSG00000112096.17	191.94	151.42	171.68	ENCSR985KAT
K562	SOD2	ENSG00000112096.17	82.76	75.84	79.30	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SOD2 is not avaliable on ENCORE database.

Proteins bound to RNA

SOD2 RNA is bound by 32 proteins.

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eCLIP assay for SOD2 is not avaliable on ENCORE database.

32 proteins are bound to SOD2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	160100911	160100991	-	3'-UTR,intron-Distal	4.44439	44.70527	HepG2	UPF1
chr6	160101694	160101759	-	3'-UTR,intron-Distal	4.46156	38.21934	HepG2	UPF1
chr6	160100899	160100911	-	3'-UTR,intron-Distal	5.25826	35.80746	HepG2	UPF1
chr6	160100908	160100980	-	3'-UTR,intron-Distal	4.86858	33.28516	K562	UPF1
chr6	160100849	160100899	-	3'-UTR,intron-Distal	5.10926	30.28760	HepG2	UPF1
chr6	160102007	160102068	-	3'-UTR,intron-Distal	5.09053	29.24619	K562	PUM2
chr6	160101307	160101449	-	3'-UTR,intron-Distal	4.94119	28.89695	K562	TARDBP
chr6	160102570	160102647	-	3'-UTR,intron-Distal	5.99958	28.68810	K562	UPF1
chr6	160102497	160102552	-	3'-UTR,intron-Distal	5.95928	25.53644	K562	FAM120A
chr6	160101569	160101597	-	3'-UTR,intron-Distal	3.73827	22.24021	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 94 entries

eCLIP assay for SOD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SOD2 is not available on ENCORE database.
157 RBPs can affect the levels of SOD2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SOD2 is not available on ENCORE database.

157 RBPs can affect the gene expression of SOD2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SOD2	ENSG00000112096.12	17139.17050	8374.82010	1.03310	93.70190	90.73130	HepG2	DAZAP1
SOD2	ENSG00000112096.12	1958.72430	6816.83680	-1.79920	88.84610	85.25580	HepG2	HNRNPM
SOD2	ENSG00000112096.12	6918.61940	15637.71290	-1.17650	86.38660	84.44310	HepG2	NELFE
SOD2	ENSG00000112096.12	1391.65330	4923.91760	-1.82300	83.67800	81.18190	HepG2	RPS19
SOD2	ENSG00000112096.12	6668.82430	14564.89000	-1.12700	81.67760	79.34950	HepG2	RECQL
SOD2	ENSG00000112096.12	7336.11980	15269.59540	-1.05760	80.40610	78.66000	HepG2	SRSF1
SOD2	ENSG00000112096.12	4234.44150	9364.55810	-1.14500	75.44630	73.39680	HepG2	ACO1
SOD2	ENSG00000112096.12	9814.71510	4324.47730	1.18230	64.17400	61.87940	HepG2	SRSF7
SOD2	ENSG00000112096.12	4376.05960	8901.12710	-1.02440	62.70950	60.49270	HepG2	SUCLG1
SOD2	ENSG00000112096.12	4337.58210	17561.56980	-2.01750	62.18250	60.20170	HepG2	AKAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 188 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SOD2 is not available on ENCORE database.

33 RBPs can affect the splicing of SOD2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	-0.27300	0.00000	excluded	HepG2	AKAP1
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	0.16600	0.00017	included	HepG2	UPF1
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	-0.27300	0.00000	excluded	HepG2	HNRNPL
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	0.22000	0.00000	included	HepG2	U2AF2
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	-0.47800	0.00000	excluded	HepG2	UCHL5
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	-0.17100	0.00169	excluded	K562	HNRNPK
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	-0.29800	0.00102	excluded	K562	UCHL5
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	-0.14100	0.00002	excluded	HepG2	PCBP1
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	0.17900	0.00000	included	HepG2	SRSF1
RI	SOD2	ENSG00000112096.12	chr6	-	160100095	160103670	160100095	160100330	160103505	160103670	0.12700	0.00001	included	HepG2	QKI

Showing 1 to 10 of 43 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SOD2

General Information

Functions

Localization

Domains (AlphaFold: SOD2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SOD2 is not avaliable on ENCORE database.

32 proteins are bound to SOD2 RNA:

eCLIP assay for SOD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SOD2 is not available on ENCORE database.

157 RBPs can affect the gene expression of SOD2 :

The Knockdown/knockout RNA-Seq assay for SOD2 is not available on ENCORE database.

33 RBPs can affect the splicing of SOD2 :

The Knockdown/knockout RNA-Seq assay for SOD2 is not avaliable on ENCORE database.