RPS23

General Information

Gene Name : RPS23
Gene ID : ENSG00000186468.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPS23)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPS23	ENSG00000186468.12	5161.03	4275.70	4718.36	ENCSR000AEF
HepG2	RPS23	ENSG00000186468.12	4002.07	4551.27	4276.67	ENCSR985KAT
K562	RPS23	ENSG00000186468.12	4300.48	3648.83	3974.65	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPS23 is not avaliable on ENCORE database.

Proteins bound to RNA

RPS23 RNA is bound by 22 proteins.

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eCLIP assay for RPS23 is not avaliable on ENCORE database.

22 proteins are bound to RPS23 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	81574137	81574170	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.28382	400.00000	K562	PABPC4
chr5	81574145	81574171	-	5'-UTR,intron-Distal,intron-Proximal	3.22154	400.00000	K562	DDX3X
chr5	81574138	81574145	-	5'-UTR,CDS,intron-Distal	3.19286	400.00000	K562	DDX3X
chr5	81573535	81573599	-	CDS,intron-Distal	3.97203	400.00000	K562	PABPC4
chr5	81573645	81573650	-	CDS,intron-Distal	3.48887	400.00000	K562	DDX3X
chr5	81573656	81573661	-	CDS,intron-Distal	4.07356	400.00000	HepG2	SUB1
chr5	81573650	81573656	-	CDS,intron-Distal	3.47395	400.00000	K562	DDX3X
chr5	81573601	81573632	-	CDS,intron-Distal	5.73942	400.00000	HepG2	SUB1
chr5	81573656	81573661	-	CDS,intron-Distal	3.32239	400.00000	K562	DDX3X
chr5	81573632	81573656	-	CDS,intron-Distal	5.32963	400.00000	HepG2	SUB1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 60 entries

eCLIP assay for RPS23 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPS23 is not available on ENCORE database.
157 RBPs can affect the levels of RPS23.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPS23 is not available on ENCORE database.

157 RBPs can affect the gene expression of RPS23 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPS23	ENSG00000186468.8	9866.60280	30351.69040	-1.62120	204.56210	202.20890	HepG2	SRSF1
RPS23	ENSG00000186468.8	9395.44800	31083.34280	-1.72610	192.82500	190.17460	HepG2	NELFE
RPS23	ENSG00000186468.8	8634.92650	27930.28080	-1.69360	174.14750	171.40940	HepG2	PTBP1
RPS23	ENSG00000186468.8	3777.48460	11904.24400	-1.65600	137.73210	133.65340	HepG2	AKAP8L
RPS23	ENSG00000186468.8	2741.64050	9669.74770	-1.81840	111.75590	109.49530	HepG2	TIAL1
RPS23	ENSG00000186468.8	14103.04650	29078.21150	-1.04390	76.18840	73.93520	HepG2	SF3B4
RPS23	ENSG00000186468.8	3200.72720	9798.36110	-1.61410	75.34270	72.95050	HepG2	RPS19
RPS23	ENSG00000186468.8	12793.57240	30248.21400	-1.24140	68.59340	66.29330	HepG2	QKI
RPS23	ENSG00000186468.8	14792.02950	28950.59530	-0.96880	66.70750	64.54370	HepG2	RECQL
RPS23	ENSG00000186468.8	14022.61900	27448.45150	-0.96900	63.23540	61.05120	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 182 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPS23 is not available on ENCORE database.

2 RBPs can affect the splicing of RPS23 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	RPS23	ENSG00000186468.8	chr5	-	81573548	81573795			81573548	81573671	81573749	81573795	0.54800	0.00000	0.00000	included	K562	AQR
MXE	RPS23	ENSG00000186468.8	chr5	-	81572269	81572337	81573564	81573671	81571239	81571953	81574138	81574215	0.06400	0.00178	0.08372	1included	K562	SERBP1
A3SS	RPS23	ENSG00000186468.8	chr5	-	81572444	81572657			81572444	81572554	81573511	81573671	-0.26500	0.00215	0.01372	shorter	K562	AQR

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPS23

General Information

Functions

Localization

Domains (AlphaFold: RPS23)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPS23 is not avaliable on ENCORE database.

22 proteins are bound to RPS23 RNA:

eCLIP assay for RPS23 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPS23 is not available on ENCORE database.

157 RBPs can affect the gene expression of RPS23 :

The Knockdown/knockout RNA-Seq assay for RPS23 is not available on ENCORE database.

2 RBPs can affect the splicing of RPS23 :

The Knockdown/knockout RNA-Seq assay for RPS23 is not avaliable on ENCORE database.