FAM13A

General Information

Gene Name : FAM13A
Gene ID : ENSG00000138640.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAM13A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAM13A	ENSG00000138640.14	0.30	0.21	0.26	ENCSR000AEF
HepG2	FAM13A	ENSG00000138640.14	1.45	2.20	1.83	ENCSR985KAT
K562	FAM13A	ENSG00000138640.14	9.48	9.89	9.69	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAM13A is not avaliable on ENCORE database.

Proteins bound to RNA

FAM13A RNA is bound by 29 proteins.

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eCLIP assay for FAM13A is not avaliable on ENCORE database.

29 proteins are bound to FAM13A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	89691801	89691926	-	intron-Distal	4.84093	29.97449	K562	QKI
chr4	89733034	89733166	-	intron-Distal	6.22201	27.47492	K562	QKI
chr4	89695535	89695590	-	intron-Distal	5.28373	17.84144	HepG2	HNRNPL
chr4	89679898	89679997	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.44134	17.82250	K562	ZNF622
chr4	89649764	89649815	-	CDS,intron-Distal	3.87071	16.07427	HepG2	BCLAF1
chr4	89647820	89647942	-	3'-UTR,intron-Distal	5.88934	15.50506	K562	LIN28B
chr4	89668781	89668864	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20322	14.94535	HepG2	BCLAF1
chr4	89695493	89695535	-	intron-Distal	4.38305	14.78800	HepG2	HNRNPL
chr4	89691812	89691943	-	intron-Distal	6.47358	13.72459	HepG2	QKI
chr4	89649626	89649702	-	3'-UTR,CDS,intron-Distal	3.14367	13.23350	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 117 entries

eCLIP assay for FAM13A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAM13A is not available on ENCORE database.
171 RBPs can affect the levels of FAM13A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAM13A is not available on ENCORE database.

171 RBPs can affect the gene expression of FAM13A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAM13A	ENSG00000138640.10	203.01560	2549.77350	-3.65070	131.39740	127.78320	HepG2	MATR3
FAM13A	ENSG00000138640.10	292.30600	2681.23320	-3.19730	115.38700	113.25940	HepG2	NELFE
FAM13A	ENSG00000138640.10	333.39690	2618.08620	-2.97320	108.70460	106.78790	HepG2	SRSF1
FAM13A	ENSG00000138640.10	378.14830	2497.42460	-2.72340	90.42070	87.98180	HepG2	RECQL
FAM13A	ENSG00000138640.10	414.42800	2534.78850	-2.61270	89.93360	86.73400	HepG2	FXR1
FAM13A	ENSG00000138640.10	1523.81820	259.21460	2.55540	75.31600	72.80410	HepG2	HNRNPLL
FAM13A	ENSG00000138640.10	496.89540	2535.67610	-2.35140	73.64550	70.54570	HepG2	MAGOH
FAM13A	ENSG00000138640.10	579.63790	2409.33150	-2.05540	62.42930	60.62180	HepG2	PTBP1
FAM13A	ENSG00000138640.10	1208.95140	239.66700	2.33460	58.28280	55.79860	HepG2	CPSF6
FAM13A	ENSG00000138640.10	158.99460	932.23050	-2.55170	54.58740	52.65610	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 210 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAM13A is not available on ENCORE database.

12 RBPs can affect the splicing of FAM13A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	FAM13A	ENSG00000138640.10	chr4	-	89679904	89680315			89679904	89680052	89688703	89688746	0.25100	0.00000	0.00006	longer	K562	AKAP8L
A3SS	FAM13A	ENSG00000138640.10	chr4	-	89679904	89680315			89679904	89680052	89688703	89688746	0.22900	0.00001	0.00227	longer	K562	AGGF1
A3SS	FAM13A	ENSG00000138640.10	chr4	-	89679904	89680315			89679904	89680052	89688703	89688746	0.19600	0.00004	0.01041	longer	K562	UTP18
A3SS	FAM13A	ENSG00000138640.10	chr4	-	89679904	89680315			89679904	89680052	89688703	89688746	0.19100	0.00004	0.00812	longer	K562	RBM15
A3SS	FAM13A	ENSG00000138640.10	chr4	-	89679904	89680315			89679904	89680052	89688703	89688746	0.16700	0.00007	0.00497	longer	K562	PUS1
SE	FAM13A	ENSG00000138640.10	chr4	-	89870476	89870589			89859238	89859392	89941610	89941820	-0.23300	0.00008	0.00205	excluded	K562	PUS1
A3SS	FAM13A	ENSG00000138640.10	chr4	-	89679904	89680315			89679904	89680052	89688703	89688746	0.21800	0.00049	0.05554	longer	K562	EFTUD2
SE	FAM13A	ENSG00000138640.10	chr4	-	89711736	89711778			89708903	89709083	89744126	89744409	-0.40400	0.00077	0.01600	excluded	K562	U2AF2
MXE	FAM13A	ENSG00000138640.10	chr4	-	89870476	89870589	89940040	89940245	89859238	89859392	89941610	89941820	0.74300	0.00096	0.01975	1included	K562	PUS1
MXE	FAM13A	ENSG00000138640.10	chr4	-	89859238	89859392	89912123	89912301	89827529	89827613	89941610	89941820	-0.25900	0.00121	0.09289	2included	K562	FMR1

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAM13A

General Information

Functions

Localization

Domains (AlphaFold: FAM13A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAM13A is not avaliable on ENCORE database.

29 proteins are bound to FAM13A RNA:

eCLIP assay for FAM13A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAM13A is not available on ENCORE database.

171 RBPs can affect the gene expression of FAM13A :

The Knockdown/knockout RNA-Seq assay for FAM13A is not available on ENCORE database.

12 RBPs can affect the splicing of FAM13A :

The Knockdown/knockout RNA-Seq assay for FAM13A is not avaliable on ENCORE database.