CTSB

General Information

Gene Name : CTSB
Gene ID : ENSG00000164733.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTSB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CTSB	ENSG00000164733.20	7.78	10.33	9.05	ENCSR000AEF
HepG2	CTSB	ENSG00000164733.20	403.77	304.52	354.14	ENCSR985KAT
K562	CTSB	ENSG00000164733.20	78.03	88.09	83.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTSB is not avaliable on ENCORE database.

Proteins bound to RNA

CTSB RNA is bound by 44 proteins.

CanvasJS.com

eCLIP assay for CTSB is not avaliable on ENCORE database.

44 proteins are bound to CTSB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	11710974	11710989	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	5.14276	400.00000	HepG2	DDX3X
chr8	11703170	11703226	-	3'-UTR,CDS,intron-Distal	5.30373	400.00000	HepG2	SND1
chr8	11701494	11701556	-	3'-UTR,intron-Distal,intron-Proximal	6.98684	400.00000	HepG2	UPF1
chr8	11705233	11705332	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.64235	400.00000	HepG2	SND1
chr8	11703226	11703251	-	3'-UTR,CDS,intron-Distal	5.18371	400.00000	HepG2	SND1
chr8	11703251	11703297	-	3'-UTR,CDS,intron-Distal	4.81731	400.00000	HepG2	SND1
chr8	11702302	11702493	-	3'-UTR,intron-Distal,intron-Proximal	6.17336	400.00000	HepG2	UPF1
chr8	11725529	11725560	-	5'-UTR,intron-Distal,intron-Proximal	5.16372	400.00000	HepG2	DDX3X
chr8	11725560	11725603	-	5'-UTR,intron-Distal,intron-Proximal	5.51156	400.00000	HepG2	DDX3X
chr8	11725508	11725529	-	5'-UTR,intron-Distal	5.09305	400.00000	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 271 entries

eCLIP assay for CTSB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTSB is not available on ENCORE database.
190 RBPs can affect the levels of CTSB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CTSB is not available on ENCORE database.

190 RBPs can affect the gene expression of CTSB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTSB	ENSG00000164733.16	51248.90810	13568.02040	1.91720	194.58190	191.15890	HepG2	CELF1
CTSB	ENSG00000164733.16	7183.92640	21571.58620	-1.58630	186.96100	184.69490	HepG2	SRSF1
CTSB	ENSG00000164733.16	7696.97580	2942.20840	1.38730	174.97200	171.46700	K562	NSUN2
CTSB	ENSG00000164733.16	7675.26390	22091.47840	-1.52520	148.01420	145.67270	HepG2	NELFE
CTSB	ENSG00000164733.16	45973.56840	17549.63470	1.38930	144.98220	142.35280	HepG2	SRSF9
CTSB	ENSG00000164733.16	8433.94640	19508.17760	-1.20980	94.07120	91.49600	HepG2	PCBP1
CTSB	ENSG00000164733.16	30074.40760	13292.49040	1.17780	89.29670	86.47930	HepG2	AUH
CTSB	ENSG00000164733.16	27605.27810	14407.07600	0.93810	74.68200	72.99290	HepG2	SRFBP1
CTSB	ENSG00000164733.16	6028.43700	2054.80970	1.55270	69.40020	65.85030	K562	CPSF6
CTSB	ENSG00000164733.16	9761.18360	19850.30070	-1.02400	66.13290	64.29540	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 255 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTSB is not available on ENCORE database.

15 RBPs can affect the splicing of CTSB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	-0.10000	0.00000	0.00232	excluded	HepG2	LARP7
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	0.11100	0.00000	0.00024	included	HepG2	SRSF1
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	0.12300	0.00000	0.00019	included	HepG2	TAF15
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	-0.11400	0.00000	0.00015	excluded	HepG2	HNRNPU
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	0.08900	0.00000	0.00004	included	HepG2	SRSF9
A3SS	CTSB	ENSG00000164733.16	chr8	-	11702590	11702752	11702590	11702731	11703169	11703317	0.05200	0.00000	0.00000	longer	K562	AQR
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	-0.05600	0.00001	0.00120	excluded	K562	HNRNPU
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	0.22300	0.00002	0.00176	included	HepG2	HNRNPC
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	0.22600	0.00002	0.00069	included	K562	HNRNPC
SE	CTSB	ENSG00000164733.16	chr8	-	11721884	11721972	11710837	11710988	11725509	11725549	0.08000	0.00004	0.00313	included	HepG2	PCBP1

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTSB

General Information

Functions

Localization

Domains (AlphaFold: CTSB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTSB is not avaliable on ENCORE database.

44 proteins are bound to CTSB RNA:

eCLIP assay for CTSB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTSB is not available on ENCORE database.

190 RBPs can affect the gene expression of CTSB :

The Knockdown/knockout RNA-Seq assay for CTSB is not available on ENCORE database.

15 RBPs can affect the splicing of CTSB :

The Knockdown/knockout RNA-Seq assay for CTSB is not avaliable on ENCORE database.