LITAF

General Information

Gene Name       : LITAF
Gene ID             : ENSG00000189067.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LITAF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LITAFENSG00000189067.12123.85143.48133.66ENCSR000AEF
HepG2LITAFENSG00000189067.12210.15170.83190.49ENCSR985KAT
K562LITAFENSG00000189067.1210.209.9710.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
LITAFRibo-STAMP-293TshRNALITAF-BGRSLV07-13,LITAF-BGRSLV07-14NT-BGRSLV07-1,NT-BGRSLV07-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LITAF is not avaliable on ENCORE database.



Proteins bound to RNA
  • LITAF RNA is bound by 17 proteins.  







eCLIP assay for LITAF is not avaliable on ENCORE database.





17 proteins are bound to LITAF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161164344911643552-3'-UTR,CDS,intron-Distal,intron-Proximal4.518606.19394HepG2RPS3
chr161164311311643198-3'-UTR,intron-Distal,intron-Proximal4.413555.04923HepG2AKAP1
chr161164284911642906-3'-UTR,intron-Distal,intron-Proximal3.742417.62523K562TIA1
chr161164285411642912-3'-UTR,intron-Distal,intron-Proximal3.440418.19825HepG2UPF1
chr161164320911643269-3'-UTR,intron-Distal,intron-Proximal3.390954.95814HepG2IGF2BP3
chr161164311111643159-3'-UTR,intron-Distal,intron-Proximal3.214133.09950HepG2IGF2BP3
chr161164224711642383-3'-UTR,intron-Distal,intron-Proximal4.553915.24231K562UPF1
chr161164224811642309-3'-UTR,intron-Distal4.2138510.16689HepG2GRSF1
chr161164323411643290-3'-UTR,intron-Distal,intron-Proximal3.475054.27354HepG2UPF1
chr161164298011643037-3'-UTR,intron-Distal4.107523.31904K562IGF2BP1
chr161164230911642389-3'-UTR,intron-Distal,intron-Proximal3.8150311.24045HepG2GRSF1
chr161164350611643563-3'-UTR,CDS,intron-Distal,intron-Proximal3.950274.04453HepG2IGF2BP3
chr161164332611643435-3'-UTR,CDS,intron-Distal,intron-Proximal3.412247.14824HepG2IGF2BP3
chr161164320711643251-3'-UTR,intron-Distal,intron-Proximal3.150023.75909HepG2IGF2BP1
chr161164349611643577-3'-UTR,CDS,intron-Distal,intron-Proximal4.0995011.41162HepG2LARP4
chr161164286111642910-3'-UTR,intron-Distal,intron-Proximal3.756656.81089HepG2IGF2BP3
chr161166916011669298-5'-UTR,intron-Distal,intron-Proximal3.591137.33907HepG2HNRNPK
chr161168068811680749-5'-UTR,intron-Distal3.539727.29769HepG2PRPF8
chr161165053211650578-CDS,intron-Distal,intron-Proximal4.064464.00968HepG2DDX3X
chr161168064711680688-intron-Distal4.100033.05388HepG2PRPF8
chr161166424711664270-intron-Distal3.730544.92676HepG2XPO5
chr161164375811643822-intron-Distal4.125823.09122HepG2PTBP1
chr161171567511715682-intron-Distal6.8228329.76308K562EXOSC5
chr161166955111669601-intron-Distal3.897456.01218HepG2HNRNPM
chr161166640711666494-intron-Distal3.726825.42728HepG2HNRNPM
chr161168056911680611-intron-Distal4.090083.16310HepG2CSTF2T
chr161166422611664247-intron-Distal4.023024.60713HepG2XPO5
chr161171568211715688-intron-Distal6.8228329.76308K562EXOSC5
chr161168066311680723-intron-Distal3.330484.14347HepG2XRN2
chr161171566711715675-intron-Distal6.8228329.76308K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LITAF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LITAF is not available on ENCORE database.

  • 116 RBPs can affect the levels of LITAF.  








The Knockdown/knockout RNA-Seq assay for LITAF is not available on ENCORE database.





116 RBPs can affect the gene expression of LITAF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LITAFENSG00000189067.86890.853904241.777700.6999010.037308.41540HepG2ABCF1
LITAFENSG00000189067.83685.602403065.780100.265504.647203.89770HepG2ACO1
LITAFENSG00000189067.81151.914203281.21100-1.5102041.0926038.03530HepG2ADAR
LITAFENSG00000189067.84771.586506825.20200-0.516404.854604.17680HepG2AKAP1
LITAFENSG00000189067.85933.161204721.798300.329402.284501.33270HepG2AKAP8
LITAFENSG00000189067.84510.589403080.230300.5502015.5018013.89290HepG2AKAP8L
LITAFENSG00000189067.811483.898205647.205201.0239021.2583019.35020HepG2ASCC1
LITAFENSG00000189067.83118.621403827.43240-0.295502.763201.35920HepG2ATP5C1
LITAFENSG00000189067.82344.166503353.67260-0.516704.717403.49390HepG2BCCIP
LITAFENSG00000189067.81893.950302914.00010-0.621606.957405.60820HepG2BCLAF1
LITAFENSG00000189067.82191.508603519.71160-0.6835011.053909.96200HepG2BOP1
LITAFENSG00000189067.83566.245905365.25840-0.589207.593206.36170HepG2CIRBP
LITAFENSG00000189067.85685.119203065.169600.8911054.9145052.85450HepG2CKAP4
LITAFENSG00000189067.83623.201705430.62440-0.583903.897602.98370HepG2CNOT7
LITAFENSG00000189067.83533.381102071.427000.7703013.0726011.05280HepG2CSTF2
LITAFENSG00000189067.85300.485704476.268400.243703.400002.70250HepG2CELF1
LITAFENSG00000189067.83464.280004813.14900-0.4744016.3292014.78750HepG2DAZAP1
LITAFENSG00000189067.83721.949602835.433000.392409.667308.28900HepG2DDX19B
LITAFENSG00000189067.83880.092803252.498400.254402.360501.52290HepG2DDX24
LITAFENSG00000189067.81660.245002497.78820-0.589306.695304.67580HepG2DDX28
LITAFENSG00000189067.81723.579006537.86310-1.9234062.2809059.66900HepG2DDX3X
LITAFENSG00000189067.82547.880103297.39790-0.372002.768801.99530HepG2DDX55
LITAFENSG00000189067.85232.392403669.416900.511802.747301.77200HepG2DDX59
LITAFENSG00000189067.82915.671103882.01640-0.413004.154202.92280HepG2DDX5
LITAFENSG00000189067.83856.732402933.135200.394808.178707.13320HepG2DKC1
LITAFENSG00000189067.82479.847503304.09410-0.414007.264506.16730HepG2DNAJC21
LITAFENSG00000189067.82857.058203274.74970-0.196903.052802.37400HepG2DNAJC2
LITAFENSG00000189067.84197.518503375.512500.314302.576501.68420HepG2EEF2
LITAFENSG00000189067.81757.303203060.75390-0.800508.872806.96860HepG2AGO1
LITAFENSG00000189067.82493.217705398.93850-1.1147022.9293021.32890HepG2EIF2S1
LITAFENSG00000189067.83506.560205966.27620-0.766809.837708.64770HepG2EIF4A3
LITAFENSG00000189067.81802.569105809.36120-1.6883032.7884030.61790HepG2EIF4B
LITAFENSG00000189067.82947.753505578.66990-0.9203042.3370040.51080HepG2ETF1
LITAFENSG00000189067.85307.321704283.123400.309202.171501.48550HepG2FIP1L1
LITAFENSG00000189067.81986.653303236.75440-0.704203.038401.97300HepG2FTO
LITAFENSG00000189067.82985.313103971.38100-0.411805.096704.04170HepG2FUBP3
LITAFENSG00000189067.84167.313206020.28390-0.530706.105505.10260HepG2FXR1
LITAFENSG00000189067.84169.248105584.40080-0.421603.648602.88910HepG2G3BP1
LITAFENSG00000189067.83180.295202439.651200.382403.542802.51650HepG2GEMIN5
LITAFENSG00000189067.85074.328303663.171100.470004.541203.73420HepG2GPKOW
LITAFENSG00000189067.85625.005203335.746300.7537015.4835014.15660HepG2HNRNPA1
LITAFENSG00000189067.83723.461704423.39210-0.248503.680402.62720HepG2HNRNPA2B1
LITAFENSG00000189067.83775.546105655.40120-0.582908.458007.29030HepG2HNRNPK
LITAFENSG00000189067.82810.766904384.42900-0.6414028.5710026.67350HepG2HNRNPL
LITAFENSG00000189067.81756.262505327.40100-1.6009011.594609.71360HepG2IGF2BP3
LITAFENSG00000189067.87591.571305709.600700.410902.913201.88010HepG2KHSRP
LITAFENSG00000189067.82649.623303250.84520-0.295002.539201.38100HepG2LIN28B
LITAFENSG00000189067.84568.372806022.38820-0.398703.563602.81870HepG2MAGOH
LITAFENSG00000189067.84313.315406056.00350-0.489604.610203.81350HepG2MATR3
LITAFENSG00000189067.82678.779503564.88210-0.412302.148901.30440HepG2MTPAP
LITAFENSG00000189067.84401.011206198.58210-0.494104.952604.11570HepG2NCBP2
LITAFENSG00000189067.83353.961904871.81960-0.538604.039902.32020HepG2NKRF
LITAFENSG00000189067.84997.942503028.076500.722804.413603.01130HepG2NONO
LITAFENSG00000189067.83725.537305519.90060-0.567206.490905.39720HepG2PABPC4
LITAFENSG00000189067.82500.612403648.39940-0.5450014.3185012.64670HepG2PARN
LITAFENSG00000189067.83320.893905569.74870-0.7460030.4376028.79550HepG2PCBP1
LITAFENSG00000189067.82807.093003968.35430-0.499503.203102.08770HepG2PCBP2
LITAFENSG00000189067.82467.982603287.46560-0.413607.074805.93800HepG2PPIL4
LITAFENSG00000189067.82193.748303874.65750-0.8207030.2141028.19890HepG2PRPF4
LITAFENSG00000189067.82039.332102543.45990-0.318702.345201.59820HepG2PRPF8
LITAFENSG00000189067.84807.437405667.26820-0.237403.767703.15120HepG2PTBP1
LITAFENSG00000189067.86348.583604555.947700.478607.023506.13110HepG2PUF60
LITAFENSG00000189067.88131.943704832.799400.7506020.8455019.11170HepG2PUM2
LITAFENSG00000189067.83999.986003122.704000.357108.053807.09500HepG2PUS1
LITAFENSG00000189067.81622.603906138.13100-1.91950124.27810121.31390HepG2QKI
LITAFENSG00000189067.85340.873104534.356400.236102.435201.62480HepG2RBM15
LITAFENSG00000189067.84042.332005570.62010-0.462707.169906.12580HepG2RBM25
LITAFENSG00000189067.83881.359006307.25780-0.7005027.4318026.09150HepG2NELFE
LITAFENSG00000189067.84480.278405874.11340-0.390809.655208.60700HepG2RECQL
LITAFENSG00000189067.87111.011904779.188200.573208.948007.82750HepG2RPLP0
LITAFENSG00000189067.82851.854003762.18030-0.399702.144901.31200HepG2RPS10
LITAFENSG00000189067.83368.917302666.311000.337303.625102.93100HepG2RPS19
LITAFENSG00000189067.83229.479305453.21960-0.755807.716506.40020HepG2RPS3A
LITAFENSG00000189067.81785.420702515.98710-0.494904.374903.41240HepG2RRP9
LITAFENSG00000189067.81919.758003282.41750-0.7738031.5884029.75200HepG2SAFB2
LITAFENSG00000189067.83627.668305135.15450-0.501404.092102.51340HepG2SART3
LITAFENSG00000189067.83486.888402675.897500.381803.533502.46800HepG2SERBP1
LITAFENSG00000189067.86868.966004144.482900.728807.211006.08680HepG2SF3A3
LITAFENSG00000189067.84194.814105900.64340-0.4923014.5164013.32450HepG2SF3B4
LITAFENSG00000189067.83843.143104368.40210-0.184802.958002.23450HepG2SLBP
LITAFENSG00000189067.85042.811803906.709400.368202.192401.35000HepG2SMNDC1
LITAFENSG00000189067.86502.290503850.120700.755906.692005.46960HepG2SNRNP70
LITAFENSG00000189067.83171.004905266.48720-0.7319032.5304031.30770HepG2SRFBP1
LITAFENSG00000189067.88042.727206158.877700.3849010.399209.61260HepG2SRSF1
LITAFENSG00000189067.86085.350304498.310500.4359011.2252010.07830HepG2SRSF5
LITAFENSG00000189067.84880.611204358.790100.163001.933701.34080HepG2SRSF7
LITAFENSG00000189067.85907.592805010.474600.237504.006403.36600HepG2SRSF9
LITAFENSG00000189067.811627.100004572.663101.34630115.44000113.43800HepG2SSB
LITAFENSG00000189067.86549.712605122.485600.354502.623301.37220HepG2SSRP1
LITAFENSG00000189067.84121.035905115.83910-0.312007.379506.44410HepG2SUCLG1
LITAFENSG00000189067.84875.713203282.446100.570705.890604.96130HepG2SUPV3L1
LITAFENSG00000189067.82652.598603406.85830-0.361003.406002.61070HepG2TARDBP
LITAFENSG00000189067.84229.506505086.72830-0.266202.908802.05380HepG2TIA1
LITAFENSG00000189067.86539.367503581.670900.8684026.8764025.61480HepG2TIAL1
LITAFENSG00000189067.84397.282503613.463800.283105.016404.30190HepG2TRIM56
LITAFENSG00000189067.84393.299703663.798300.261901.963701.42460HepG2U2AF1
LITAFENSG00000189067.84628.373003548.572600.383209.188508.20190HepG2UTP3
LITAFENSG00000189067.83122.716904884.46500-0.645405.419003.88050HepG2XPO5
LITAFENSG00000189067.84194.825803231.210100.376403.205702.42750HepG2XRN2
LITAFENSG00000189067.84783.068204042.371300.242605.209504.51890HepG2ZNF622
LITAFENSG00000189067.8433.21730241.565500.842608.551907.62770K562AGGF1
LITAFENSG00000189067.8233.41060156.009500.581102.174601.47090K562CPSF6
LITAFENSG00000189067.849.49100103.88890-1.069803.578302.10200K562EEF2
LITAFENSG00000189067.8243.88670108.461401.168909.120907.92870K562EIF2S2
LITAFENSG00000189067.8140.07360215.16120-0.619202.956702.10920K562EIF4A3
LITAFENSG00000189067.885.15550223.75760-1.3938011.1618010.03250K562FXR1
LITAFENSG00000189067.8414.51470145.236201.5129016.8324014.98840K562HSPD1
LITAFENSG00000189067.895.07830148.65130-0.644702.528801.75450K562MTPAP
LITAFENSG00000189067.8126.75400192.84070-0.605402.435501.52090K562PCBP2
LITAFENSG00000189067.874.27720185.01290-1.316603.081802.20310K562PCBP3
LITAFENSG00000189067.8288.61980193.805500.574502.740401.30820K562PNPT1
LITAFENSG00000189067.865.62410141.89100-1.112502.603501.83010K562POLR2G
LITAFENSG00000189067.8178.91320121.644400.556502.180701.45620K562PPIG
LITAFENSG00000189067.8182.5449095.822000.929703.869202.77250K562PSIP1
LITAFENSG00000189067.8133.40580210.54840-0.658303.418802.68930K562PTBP1
LITAFENSG00000189067.8392.77730214.453600.872907.132005.56570K562PUM2
LITAFENSG00000189067.8152.15740252.69350-0.731804.544102.20700K562QKI
LITAFENSG00000189067.8333.76220169.123800.980603.479701.71030K562RBM39
LITAFENSG00000189067.8155.5772087.456700.830903.281102.19950K562RCC2
LITAFENSG00000189067.8116.84120212.49610-0.862904.770403.29020K562NELFE
LITAFENSG00000189067.852.17660126.49170-1.277602.936401.82210K562SAFB
LITAFENSG00000189067.8401.34300125.688301.674906.722804.58190K562SF1
LITAFENSG00000189067.852.55300142.34830-1.437603.585302.65160K562SYNCRIP
LITAFENSG00000189067.8422.95800218.912700.950107.604505.63610K562U2AF1
LITAFENSG00000189067.8335.68420226.064500.570303.768202.82980K562U2AF2
LITAFENSG00000189067.899.31870155.82770-0.649802.836901.98030K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LITAF is not available on ENCORE database.






No RBPs affect the alternative splcing events of LITAF on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LITAF is not avaliable on ENCORE database.