TFR2

General Information

Gene Name : TFR2
Gene ID : ENSG00000106327.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TFR2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TFR2	ENSG00000106327.12	0.57	1.00	0.78	ENCSR000AEF
HepG2	TFR2	ENSG00000106327.12	29.77	14.41	22.09	ENCSR985KAT
K562	TFR2	ENSG00000106327.12	45.88	37.18	41.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TFR2 is not avaliable on ENCORE database.

Proteins bound to RNA

TFR2 RNA is bound by 40 proteins.

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eCLIP assay for TFR2 is not avaliable on ENCORE database.

40 proteins are bound to TFR2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	100230533	100230588	-	intron-Distal,intron-Proximal	4.57713	61.66766	K562	AQR
chr7	100230588	100230617	-	intron-Distal,intron-Proximal	5.59564	56.61027	K562	AQR
chr7	100231718	100231840	-	intron-Distal	6.09033	44.92707	K562	EIF4G2
chr7	100230617	100230624	-	intron-Distal,intron-Proximal	5.19548	41.94443	K562	AQR
chr7	100230508	100230641	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.19367	41.09693	K562	DDX24
chr7	100230506	100230636	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.78186	28.64989	K562	EFTUD2
chr7	100225728	100225794	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.65506	28.57789	K562	DDX24
chr7	100239217	100239286	-	5'-UTR,intron-Distal,intron-Proximal	6.18986	27.46873	HepG2	DDX3X
chr7	100239286	100239386	-	5'-UTR,intron-Distal,intron-Proximal	4.62425	27.00263	HepG2	DDX3X
chr7	100218724	100218808	-	3'-UTR,CDS,intron-Distal	5.94307	24.77140	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 136 entries

eCLIP assay for TFR2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TFR2 is not available on ENCORE database.
160 RBPs can affect the levels of TFR2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TFR2 is not available on ENCORE database.

160 RBPs can affect the gene expression of TFR2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TFR2	ENSG00000106327.8	520.01750	4892.26790	-3.23390	99999.99999	99999.99999	HepG2	SRSF1
TFR2	ENSG00000106327.8	958.09060	4424.29990	-2.20720	191.68860	188.21720	HepG2	PCBP1
TFR2	ENSG00000106327.8	3154.35560	629.84350	2.32420	173.51630	169.97590	HepG2	HNRNPF
TFR2	ENSG00000106327.8	6745.83840	1929.53900	1.80560	171.30040	169.01790	HepG2	SSB
TFR2	ENSG00000106327.8	982.14470	4501.82800	-2.19650	128.38610	126.09090	HepG2	PTBP1
TFR2	ENSG00000106327.8	3567.09250	620.21440	2.52380	125.40460	122.09980	HepG2	IGF2BP1
TFR2	ENSG00000106327.8	1460.92530	4687.09630	-1.68180	124.03900	121.22050	HepG2	SF3B4
TFR2	ENSG00000106327.8	345.81610	2384.58920	-2.78570	107.52460	105.18820	HepG2	ACO1
TFR2	ENSG00000106327.8	5603.32010	703.95270	2.99260	107.24070	104.22790	HepG2	GPKOW
TFR2	ENSG00000106327.8	1401.32650	3980.08110	-1.50600	103.68350	101.35520	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 196 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TFR2 is not available on ENCORE database.

48 RBPs can affect the splicing of TFR2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TFR2	ENSG00000106327.8	chr7	-	100226875	100226995	100225846	100225929	100228511	100228675	-0.18300	0.00001	excluded	K562	SRSF1
SE	TFR2	ENSG00000106327.8	chr7	-	100226875	100226995	100225846	100225929	100228511	100228675	-0.08200	0.00105	excluded	HepG2	DDX3X
SE	TFR2	ENSG00000106327.8	chr7	-	100238598	100238851	100238308	100238495	100239099	100239389	-0.17500	0.00000	excluded	HepG2	PCBP1
SE	TFR2	ENSG00000106327.8	chr7	-	100226875	100226995	100225846	100225929	100228511	100228675	-0.09700	0.00016	excluded	K562	HNRNPU
A3SS	TFR2	ENSG00000106327.8	chr7	-	100224886	100225134	100224886	100225114	100225199	100225309	0.16200	0.00003	longer	K562	RBM22
A3SS	TFR2	ENSG00000106327.8	chr7	-	100229428	100229603	100229428	100229568	100229704	100229821	0.22000	0.00000	longer	K562	RBM22
RI	TFR2	ENSG00000106327.8	chr7	-	100224886	100225284	100224886	100225114	100225199	100225284	0.37200	0.00000	included	K562	SF3B4
RI	TFR2	ENSG00000106327.8	chr7	-	100225529	100225748	100225529	100225597	100225695	100225748	0.13800	0.00000	included	HepG2	PCBP2
RI	TFR2	ENSG00000106327.8	chr7	-	100224886	100225284	100224886	100225114	100225199	100225284	0.37600	0.00000	included	HepG2	PRPF8
RI	TFR2	ENSG00000106327.8	chr7	-	100224886	100225284	100224886	100225114	100225199	100225284	0.23000	0.00003	included	K562	SRSF1

Showing 1 to 10 of 122 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TFR2

General Information

Functions

Localization

Domains (AlphaFold: TFR2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TFR2 is not avaliable on ENCORE database.

40 proteins are bound to TFR2 RNA:

eCLIP assay for TFR2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TFR2 is not available on ENCORE database.

160 RBPs can affect the gene expression of TFR2 :

The Knockdown/knockout RNA-Seq assay for TFR2 is not available on ENCORE database.

48 RBPs can affect the splicing of TFR2 :

The Knockdown/knockout RNA-Seq assay for TFR2 is not avaliable on ENCORE database.