PTP4A3

General Information

Gene Name : PTP4A3
Gene ID : ENSG00000184489.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTP4A3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTP4A3	ENSG00000184489.11	4.43	21.06	12.74	ENCSR000AEF
HepG2	PTP4A3	ENSG00000184489.11	11.82	2.12	6.97	ENCSR985KAT
K562	PTP4A3	ENSG00000184489.11	101.50	44.49	73.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTP4A3 is not avaliable on ENCORE database.

Proteins bound to RNA

PTP4A3 RNA is bound by 50 proteins.

CanvasJS.com

eCLIP assay for PTP4A3 is not avaliable on ENCORE database.

50 proteins are bound to PTP4A3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	142425264	142425338	+	intron-Distal	5.86139	78.51653	HepG2	CSTF2T
chr8	142423333	142423392	+	intron-Distal	5.92629	66.96410	HepG2	CSTF2T
chr8	142423476	142423556	+	intron-Distal	5.69049	58.94904	HepG2	CSTF2T
chr8	142424509	142424585	+	intron-Distal	5.10311	54.71847	HepG2	CSTF2T
chr8	142425489	142425552	+	intron-Distal	5.61232	53.85810	HepG2	CSTF2T
chr8	142425432	142425489	+	intron-Distal	6.69788	52.88195	HepG2	CSTF2T
chr8	142424807	142424863	+	intron-Distal	6.62081	50.53700	HepG2	CSTF2T
chr8	142425889	142425976	+	intron-Distal	7.44362	50.44351	HepG2	CSTF2T
chr8	142425256	142425336	+	intron-Distal	4.84109	49.90358	HepG2	FAM120A
chr8	142425113	142425177	+	intron-Distal	5.59084	49.50310	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 593 entries

eCLIP assay for PTP4A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTP4A3 is not available on ENCORE database.
137 RBPs can affect the levels of PTP4A3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTP4A3 is not available on ENCORE database.

137 RBPs can affect the gene expression of PTP4A3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTP4A3	ENSG00000184489.7	110.29990	1198.45160	-3.44170	95.34210	93.49460	HepG2	SRSF1
PTP4A3	ENSG00000184489.7	570.40040	123.27800	2.21000	53.83630	51.76910	HepG2	TRIM56
PTP4A3	ENSG00000184489.7	1612.41470	551.56840	1.54750	46.87990	44.31190	K562	PTBP1
PTP4A3	ENSG00000184489.7	373.22110	1227.31480	-1.71740	43.40550	41.83950	HepG2	NELFE
PTP4A3	ENSG00000184489.7	2380.61660	884.50050	1.42830	42.97050	40.70540	K562	HNRNPC
PTP4A3	ENSG00000184489.7	491.05690	112.15730	2.13030	42.77770	40.09100	HepG2	PPIL4
PTP4A3	ENSG00000184489.7	676.53530	227.46850	1.57240	37.75970	35.80210	HepG2	SLBP
PTP4A3	ENSG00000184489.7	524.06720	111.98620	2.22630	37.40650	35.46520	HepG2	SAFB2
PTP4A3	ENSG00000184489.7	295.24610	1102.75850	-1.90110	36.49600	34.96690	HepG2	PTBP1
PTP4A3	ENSG00000184489.7	349.66600	974.96600	-1.47940	35.34750	33.79740	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 170 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTP4A3 is not available on ENCORE database.

31 RBPs can affect the splicing of PTP4A3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PTP4A3	ENSG00000184489.7	chr8	+	142437849	142437924	142437038	142437169	142441026	142441620	-0.19200	0.00016	excluded	K562	SRSF1
SE	PTP4A3	ENSG00000184489.7	chr8	+	142437849	142437924	142437038	142437169	142441026	142441620	-0.13400	0.00002	excluded	K562	AKAP8L
SE	PTP4A3	ENSG00000184489.7	chr8	+	142433266	142433447	142431487	142432445	142435147	142435240	0.23400	0.00000	included	HepG2	HNRNPM
SE	PTP4A3	ENSG00000184489.7	chr8	+	142436554	142436728	142435147	142435240	142437038	142437169	0.07700	0.00005	included	HepG2	HNRNPK
SE	PTP4A3	ENSG00000184489.7	chr8	+	142433266	142433447	142431487	142432445	142435147	142435240	0.19600	0.00000	included	K562	HNRNPM
SE	PTP4A3	ENSG00000184489.7	chr8	+	142437849	142437924	142437038	142437169	142441026	142441620	-0.09600	0.00005	excluded	K562	HNRNPL
SE	PTP4A3	ENSG00000184489.7	chr8	+	142433266	142433447	142431487	142432445	142435147	142435240	0.18100	0.00001	included	K562	U2AF2
SE	PTP4A3	ENSG00000184489.7	chr8	+	142436554	142436728	142435147	142435240	142437038	142437169	0.13700	0.00000	included	K562	HNRNPU
SE	PTP4A3	ENSG00000184489.7	chr8	+	142437849	142437924	142437038	142437169	142441026	142441620	0.14700	0.00176	included	HepG2	FUBP3
SE	PTP4A3	ENSG00000184489.7	chr8	+	142436554	142436728	142435147	142435240	142437038	142437169	0.23000	0.00000	included	K562	HNRNPK

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTP4A3

General Information

Functions

Localization

Domains (AlphaFold: PTP4A3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTP4A3 is not avaliable on ENCORE database.

50 proteins are bound to PTP4A3 RNA:

eCLIP assay for PTP4A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTP4A3 is not available on ENCORE database.

137 RBPs can affect the gene expression of PTP4A3 :

The Knockdown/knockout RNA-Seq assay for PTP4A3 is not available on ENCORE database.

31 RBPs can affect the splicing of PTP4A3 :

The Knockdown/knockout RNA-Seq assay for PTP4A3 is not avaliable on ENCORE database.