CDCA8

General Information

Gene Name : CDCA8
Gene ID : ENSG00000134690.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDCA8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDCA8	ENSG00000134690.10	47.56	55.10	51.33	ENCSR000AEF
HepG2	CDCA8	ENSG00000134690.10	37.09	39.25	38.17	ENCSR985KAT
K562	CDCA8	ENSG00000134690.10	89.44	78.71	84.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDCA8 is not avaliable on ENCORE database.

Proteins bound to RNA

CDCA8 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for CDCA8 is not avaliable on ENCORE database.

26 proteins are bound to CDCA8 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	38175294	38175312	+	3'-UTR	5.50592	84.33874	K562	PUM2
chr1	38174962	38175048	+	3'-UTR	5.49776	51.53587	K562	UPF1
chr1	38175317	38175359	+	3'-UTR	5.31795	49.09243	K562	PUM2
chr1	38158701	38158786	+	CDS,intron-Proximal	4.71245	42.03208	K562	AQR
chr1	38174216	38174297	+	3'-UTR	4.06661	38.84179	K562	UPF1
chr1	38174881	38174940	+	3'-UTR	5.81589	37.06230	K562	UPF1
chr1	38174297	38174375	+	3'-UTR	4.09685	35.68215	K562	UPF1
chr1	38174657	38174733	+	3'-UTR	4.69813	33.81727	K562	UPF1
chr1	38175294	38175345	+	3'-UTR	4.99916	33.63389	K562	UPF1
chr1	38174498	38174546	+	3'-UTR	5.71431	31.72516	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 74 entries

eCLIP assay for CDCA8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDCA8 is not available on ENCORE database.
161 RBPs can affect the levels of CDCA8.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDCA8 is not available on ENCORE database.

161 RBPs can affect the gene expression of CDCA8 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDCA8	ENSG00000134690.6	136.63580	1640.96440	-3.58610	203.26040	200.74380	HepG2	SRFBP1
CDCA8	ENSG00000134690.6	328.08650	1738.22480	-2.40550	126.66320	123.74860	HepG2	ETF1
CDCA8	ENSG00000134690.6	212.08250	1452.84860	-2.77620	124.14770	121.75570	HepG2	RBM22
CDCA8	ENSG00000134690.6	46.79710	904.31650	-4.27230	104.62680	102.24570	HepG2	BOP1
CDCA8	ENSG00000134690.6	120.72940	995.05560	-3.04300	89.26930	86.82800	HepG2	RPLP0
CDCA8	ENSG00000134690.6	193.74880	922.49430	-2.25140	87.25990	84.82370	HepG2	CKAP4
CDCA8	ENSG00000134690.6	144.88240	934.89810	-2.68990	85.35550	83.30400	HepG2	TIAL1
CDCA8	ENSG00000134690.6	82.40160	887.96310	-3.42980	79.87360	77.33960	HepG2	SUPV3L1
CDCA8	ENSG00000134690.6	32.45320	545.25400	-4.07050	72.87320	70.31120	HepG2	EIF2S1
CDCA8	ENSG00000134690.6	90.25790	680.46070	-2.91440	55.32260	52.73220	HepG2	RRP9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 194 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDCA8 is not available on ENCORE database.

9 RBPs can affect the splicing of CDCA8 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CDCA8	ENSG00000134690.6	chr1	+	38161581	38161622			38158576	38158705	38164576	38164649	-0.05900	0.00000	excluded	K562	AQR
SE	CDCA8	ENSG00000134690.6	chr1	+	38170785	38170903			38168923	38169019	38171112	38171239	0.10100	0.00000	included	K562	U2AF1
A3SS	CDCA8	ENSG00000134690.6	chr1	+	38171095	38171239			38171112	38171239	38168923	38169019	0.05200	0.00000	longer	K562	AQR
MXE	CDCA8	ENSG00000134690.6	chr1	+	38171112	38171239	38172649	38172736	38168923	38169019	38173993	38175391	0.12000	0.00008	1included	K562	DROSHA
MXE	CDCA8	ENSG00000134690.6	chr1	+	38166075	38166193	38167403	38167490	38164613	38164649	38168923	38169019	0.05200	0.00000	1included	K562	AQR
MXE	CDCA8	ENSG00000134690.6	chr1	+	38166075	38166193	38167277	38167490	38164613	38164649	38168923	38169019	0.05600	0.00000	1included	K562	AQR
MXE	CDCA8	ENSG00000134690.6	chr1	+	38158576	38158705	38161581	38161622	38158152	38158250	38164576	38164649	0.11000	0.00000	1included	K562	AQR
MXE	CDCA8	ENSG00000134690.6	chr1	+	38158576	38158705	38161558	38161622	38158152	38158250	38164576	38164649	0.12500	0.00000	1included	K562	AQR
MXE	CDCA8	ENSG00000134690.6	chr1	+	38167403	38167490	38168923	38169019	38166107	38166193	38171112	38171239	0.06200	0.00000	1included	K562	AQR
MXE	CDCA8	ENSG00000134690.6	chr1	+	38164576	38164649	38166107	38166193	38158576	38158705	38167425	38167490	0.06500	0.00000	1included	K562	AQR

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDCA8

General Information

Functions

Localization

Domains (AlphaFold: CDCA8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDCA8 is not avaliable on ENCORE database.

26 proteins are bound to CDCA8 RNA:

eCLIP assay for CDCA8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDCA8 is not available on ENCORE database.

161 RBPs can affect the gene expression of CDCA8 :

The Knockdown/knockout RNA-Seq assay for CDCA8 is not available on ENCORE database.

9 RBPs can affect the splicing of CDCA8 :

The Knockdown/knockout RNA-Seq assay for CDCA8 is not avaliable on ENCORE database.