ABCA7

General Information

Gene Name : ABCA7
Gene ID : ENSG00000064687.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ABCA7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ABCA7	ENSG00000064687.12	2.93	7.75	5.34	ENCSR000AEF
HepG2	ABCA7	ENSG00000064687.12	11.66	4.31	7.98	ENCSR985KAT
K562	ABCA7	ENSG00000064687.12	23.54	20.99	22.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ABCA7 is not avaliable on ENCORE database.

Proteins bound to RNA

ABCA7 RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for ABCA7 is not avaliable on ENCORE database.

30 proteins are bound to ABCA7 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	1056946	1057002	+	CDS	4.44426	19.24479	K562	DDX24
chr19	1046589	1046648	+	intron-Distal	5.55796	18.40538	K562	DDX24
chr19	1042711	1042798	+	CDS,intron-Proximal	4.08886	17.73703	K562	AQR
chr19	1042748	1042788	+	CDS	3.69987	16.71860	K562	BUD13
chr19	1042406	1042439	+	intron-Proximal	3.93302	16.58593	K562	AQR
chr19	1046570	1046662	+	intron-Distal	3.21117	16.26336	K562	BUD13
chr19	1051239	1051284	+	CDS	5.20013	16.03961	K562	DDX24
chr19	1042394	1042406	+	CDS,intron-Proximal	4.34543	14.93802	K562	AQR
chr19	1042716	1042748	+	CDS,intron-Proximal	3.53556	14.59467	K562	BUD13
chr19	1044575	1044607	+	CDS,intron-Proximal	4.26548	14.49791	K562	DDX24
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 173 entries

eCLIP assay for ABCA7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ABCA7 is not available on ENCORE database.
130 RBPs can affect the levels of ABCA7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ABCA7 is not available on ENCORE database.

130 RBPs can affect the gene expression of ABCA7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ABCA7	ENSG00000064687.8	116.86220	1822.20060	-3.96280	259.16030	256.59330	HepG2	SRSF1
ABCA7	ENSG00000064687.8	1491.53940	3317.96520	-1.15350	53.74100	51.23600	K562	DDX47
ABCA7	ENSG00000064687.8	598.11800	1637.95860	-1.45340	48.50300	46.53150	HepG2	TAF15
ABCA7	ENSG00000064687.8	383.29540	1127.33840	-1.55640	43.72960	42.14410	HepG2	RBM22
ABCA7	ENSG00000064687.8	2744.80530	1174.74700	1.22430	39.83510	37.76020	HepG2	AUH
ABCA7	ENSG00000064687.8	815.33120	1738.11840	-1.09210	35.30360	33.57950	HepG2	RECQL
ABCA7	ENSG00000064687.8	1317.46410	556.18200	1.24400	35.34730	33.16350	HepG2	DNAJC21
ABCA7	ENSG00000064687.8	1405.40850	3499.66970	-1.31620	34.02150	32.16460	K562	AQR
ABCA7	ENSG00000064687.8	622.05070	1714.86850	-1.46300	32.31550	30.60720	HepG2	CKAP4
ABCA7	ENSG00000064687.8	641.12780	1712.36730	-1.41730	32.07080	30.37590	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 154 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ABCA7 is not available on ENCORE database.

17 RBPs can affect the splicing of ABCA7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ABCA7	ENSG00000064687.8	chr19	+	1053327	1053530			1052212	1052285	1053786	1053835	-0.32000	0.00001	0.00025	excluded	HepG2	U2AF2
SE	ABCA7	ENSG00000064687.8	chr19	+	1057913	1058058			1057312	1057428	1058144	1058268	0.08400	0.00001	0.00730	included	K562	ABCF1
SE	ABCA7	ENSG00000064687.8	chr19	+	1057913	1058058			1057312	1057428	1058144	1058268	-0.08600	0.00001	0.00042	excluded	K562	HNRNPC
MXE	ABCA7	ENSG00000064687.8	chr19	+	1058144	1058268	1058616	1058746	1057312	1057428	1058818	1058939	0.14600	0.00001	0.00057	1included	K562	HNRNPC
MXE	ABCA7	ENSG00000064687.8	chr19	+	1057331	1057428	1057913	1058058	1056905	1057083	1058144	1058268	0.07600	0.00001	0.00033	1included	K562	HNRNPC
MXE	ABCA7	ENSG00000064687.8	chr19	+	1057312	1057428	1057913	1058058	1056905	1057083	1058144	1058268	-0.30300	0.00002	0.00379	2included	HepG2	DDX59
MXE	ABCA7	ENSG00000064687.8	chr19	+	1057280	1057428	1057913	1058058	1056905	1057083	1058144	1058268	-0.06300	0.00004	0.02877	2included	K562	ABCF1
MXE	ABCA7	ENSG00000064687.8	chr19	+	1041508	1041602	1041829	1041971	1041360	1041426	1042062	1042175	0.12600	0.00007	0.02239	1included	K562	WDR43
A3SS	ABCA7	ENSG00000064687.8	chr19	+	1058537	1058746			1058616	1058746	1058144	1058268	0.35900	0.00011	0.00744	longer	K562	U2AF1
MXE	ABCA7	ENSG00000064687.8	chr19	+	1057312	1057428	1057913	1058058	1056905	1057083	1058144	1058268	-0.10500	0.00013	0.00790	2included	K562	PPIL4

Showing 1 to 10 of 29 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ABCA7

General Information

Functions

Localization

Domains (AlphaFold: ABCA7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ABCA7 is not avaliable on ENCORE database.

30 proteins are bound to ABCA7 RNA:

eCLIP assay for ABCA7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ABCA7 is not available on ENCORE database.

130 RBPs can affect the gene expression of ABCA7 :

The Knockdown/knockout RNA-Seq assay for ABCA7 is not available on ENCORE database.

17 RBPs can affect the splicing of ABCA7 :

The Knockdown/knockout RNA-Seq assay for ABCA7 is not avaliable on ENCORE database.