SLC35A1

General Information

Gene Name       : SLC35A1
Gene ID             : ENSG00000164414.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC35A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC35A1ENSG00000164414.178.756.567.65ENCSR000AEF
HepG2SLC35A1ENSG00000164414.1711.9019.0115.46ENCSR985KAT
K562SLC35A1ENSG00000164414.178.419.639.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC35A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC35A1 RNA is bound by 3 proteins.  







eCLIP assay for SLC35A1 is not avaliable on ENCORE database.





3 proteins are bound to SLC35A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68821888588218955+3'-UTR,CDS,intron-Proximal4.264275.97994K562AQR
chr68818269388182805+5'-UTR,CDS,intron-Distal,intron-Proximal4.583465.58865HepG2NCBP2
chr68819288288192985+intron-Distal5.257547.11021HepG2PTBP1
chr68819288288192970+intron-Distal4.563603.42734K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC35A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC35A1 is not available on ENCORE database.

  • 50 RBPs can affect the levels of SLC35A1.  








The Knockdown/knockout RNA-Seq assay for SLC35A1 is not available on ENCORE database.





50 RBPs can affect the gene expression of SLC35A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC35A1ENSG00000164414.12414.42850303.578100.449002.416401.41070HepG2AATF
SLC35A1ENSG00000164414.12837.90020546.738500.615805.313004.25910HepG2CIRBP
SLC35A1ENSG00000164414.12824.09460493.092100.740904.569603.58260HepG2CNOT7
SLC35A1ENSG00000164414.12536.73820334.939400.680205.605704.67510HepG2DDX21
SLC35A1ENSG00000164414.12486.53320327.763400.569804.198803.06310HepG2DDX24
SLC35A1ENSG00000164414.12389.03990572.21480-0.556603.305702.63720HepG2DDX6
SLC35A1ENSG00000164414.12203.38300328.90770-0.693505.987505.08150HepG2DNAJC2
SLC35A1ENSG00000164414.12307.60140550.21460-0.838906.772605.87220HepG2EIF2S1
SLC35A1ENSG00000164414.12463.00470613.37140-0.405702.233701.60980HepG2FXR1
SLC35A1ENSG00000164414.12324.67910569.09240-0.809605.783704.83580HepG2G3BP1
SLC35A1ENSG00000164414.12116.09100204.16270-0.814504.041902.91200HepG2HNRNPM
SLC35A1ENSG00000164414.12324.26860578.50580-0.835104.796403.92900HepG2IGF2BP2
SLC35A1ENSG00000164414.12276.82010378.13800-0.450003.210302.42490HepG2ILF2
SLC35A1ENSG00000164414.12299.41570458.68780-0.615403.180802.28770HepG2LARP4
SLC35A1ENSG00000164414.12316.28660613.58460-0.956008.477807.34310HepG2MAGOH
SLC35A1ENSG00000164414.12372.21740631.61010-0.762906.099305.17530HepG2NCBP2
SLC35A1ENSG00000164414.12196.41480368.13930-0.906302.511101.47490HepG2NONO
SLC35A1ENSG00000164414.12223.84880450.59780-1.009306.057504.70740HepG2PABPC1
SLC35A1ENSG00000164414.12323.48090562.60610-0.798406.077805.01960HepG2PABPC4
SLC35A1ENSG00000164414.12265.32150366.43020-0.465803.049502.16460HepG2PARN
SLC35A1ENSG00000164414.12434.04160543.09950-0.323401.825801.31580HepG2PCBP1
SLC35A1ENSG00000164414.12624.79170436.940700.515802.477401.32060HepG2PRPF6
SLC35A1ENSG00000164414.12421.32880552.57450-0.391202.458201.93800HepG2PTBP1
SLC35A1ENSG00000164414.12302.52300534.09440-0.820108.232507.27710HepG2PUF60
SLC35A1ENSG00000164414.12416.49970566.54010-0.443903.423702.68010HepG2PUM2
SLC35A1ENSG00000164414.12464.11690598.55740-0.367002.044701.49610HepG2QKI
SLC35A1ENSG00000164414.12398.04860543.18940-0.448502.902702.21450HepG2RBM25
SLC35A1ENSG00000164414.12159.98110251.65920-0.653603.380902.71000HepG2RPS19
SLC35A1ENSG00000164414.12326.11660460.97270-0.499302.872702.05860HepG2RPS2
SLC35A1ENSG00000164414.12245.45160329.67340-0.425602.545701.92310HepG2SAFB2
SLC35A1ENSG00000164414.12155.67270252.58700-0.698303.435402.38380HepG2SERBP1
SLC35A1ENSG00000164414.12387.58590575.39020-0.570003.987803.29950HepG2SF3B4
SLC35A1ENSG00000164414.12850.77820640.382500.409704.635004.03540HepG2SRFBP1
SLC35A1ENSG00000164414.12358.45080600.54650-0.744505.911605.28550HepG2SRSF1
SLC35A1ENSG00000164414.12329.76650208.597600.660603.071102.00800HepG2SRSF3
SLC35A1ENSG00000164414.12331.13430488.54540-0.561103.794503.17020HepG2SRSF9
SLC35A1ENSG00000164414.12218.47220399.35050-0.870203.197002.47670HepG2SUPV3L1
SLC35A1ENSG00000164414.12731.44710539.694000.438503.725203.09070HepG2TAF15
SLC35A1ENSG00000164414.12272.47190359.72420-0.400802.238401.77910HepG2TIAL1
SLC35A1ENSG00000164414.12237.11370362.92380-0.614104.956404.24550HepG2TRIM56
SLC35A1ENSG00000164414.12373.15350521.74230-0.483603.499402.50470HepG2TUFM
SLC35A1ENSG00000164414.12369.98030552.22620-0.577803.244202.33890HepG2UBE2L3
SLC35A1ENSG00000164414.12426.18300255.962800.735406.984306.10640HepG2UTP3
SLC35A1ENSG00000164414.12210.89960291.58180-0.467302.076601.58380HepG2ZNF622
SLC35A1ENSG00000164414.12311.05610513.69020-0.723705.625704.83990K562AQR
SLC35A1ENSG00000164414.12364.54750276.098300.400802.272101.45200K562ATP5C1
SLC35A1ENSG00000164414.12378.85790248.669800.607303.056502.30710K562G3BP2
SLC35A1ENSG00000164414.12491.42560287.785800.771906.181805.00400K562HSPD1
SLC35A1ENSG00000164414.12398.62090279.271500.513202.844002.00580K562KIF1C
SLC35A1ENSG00000164414.12775.09730614.139300.335702.420001.42720K562PUM1
SLC35A1ENSG00000164414.12107.98930164.37550-0.606102.172501.34940K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC35A1 is not available on ENCORE database.





5 RBPs can affect the splicing of SLC35A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC35A1ENSG00000164414.12chr6+8819777588197820881870798818725788210225882103850.330000.000640.03285includedHepG2SFPQ
SESLC35A1ENSG00000164414.12chr6+8819777588197820881870798818725788210225882103850.095000.001280.05834includedHepG2PCBP1
SESLC35A1ENSG00000164414.12chr6+8821640888216626882160998821616688218137882183140.147000.003170.06629includedK562AGGF1
SESLC35A1ENSG00000164414.12chr6+8819777588197820881870798818725788210225882103850.147000.000160.03880includedHepG2DDX55
SESLC35A1ENSG00000164414.12chr6+882102258821038588187079881872578821087588211028-0.343000.000420.00919excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC35A1 is not avaliable on ENCORE database.