SDHAF2

General Information

Gene Name       : SDHAF2
Gene ID             : ENSG00000167985.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SDHAF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SDHAF2ENSG00000167985.624.0035.5129.75ENCSR000AEF
HepG2SDHAF2ENSG00000167985.638.3931.2734.83ENCSR985KAT
K562SDHAF2ENSG00000167985.622.2127.1524.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDHAF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDHAF2 RNA is bound by 6 proteins.  







eCLIP assay for SDHAF2 is not avaliable on ENCORE database.





6 proteins are bound to SDHAF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116121397761214027+3'-UTR,intron-Distal3.641693.95400K562UPF1
chr116121404761214170+3'-UTR,intron-Distal4.136676.14808K562UPF1
chr116121375061213822+3'-UTR,intron-Distal,intron-Proximal3.236833.48322HepG2UPF1
chr116121386361213977+3'-UTR,intron-Distal4.612835.97422HepG2AKAP1
chr116121358961213677+3'-UTR,5'-UTR,intron-Distal3.098564.48159HepG2LARP4
chr116121397761214061+3'-UTR,intron-Distal3.893863.34655HepG2AKAP1
chr116120509161205191+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.528936.59200K562DDX3X
chr116121397261214092+3'-UTR,intron-Distal3.365733.50315HepG2UPF1
chr116119759061197664+5'-UTR,CDS,intron-Distal,intron-Proximal3.451943.40404HepG2NCBP2
chr116119760561197655+5'-UTR,CDS,intron-Distal,intron-Proximal4.098595.07098K562DDX3X
chr116121160661211665+intron-Distal3.163123.78150HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDHAF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDHAF2 is not available on ENCORE database.

  • 52 RBPs can affect the levels of SDHAF2.  








The Knockdown/knockout RNA-Seq assay for SDHAF2 is not available on ENCORE database.





52 RBPs can affect the gene expression of SDHAF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDHAF2ENSG00000167985.2547.83740299.438500.8714012.2096011.12490HepG2ACO1
SDHAF2ENSG00000167985.2443.65730300.807000.560504.788703.80300HepG2AKAP8L
SDHAF2ENSG00000167985.2703.42310449.903500.644705.142204.08870HepG2ASCC1
SDHAF2ENSG00000167985.2238.19290151.364800.654001.970001.45740HepG2BOP1
SDHAF2ENSG00000167985.2342.23070206.280500.730303.768102.61670HepG2CCAR1
SDHAF2ENSG00000167985.2605.38710427.435100.502103.267302.43080HepG2CIRBP
SDHAF2ENSG00000167985.2668.02830340.285900.973106.814705.61530HepG2CNOT7
SDHAF2ENSG00000167985.2914.06110520.879900.811208.248507.21970HepG2DDX3X
SDHAF2ENSG00000167985.2667.87860475.391000.490402.991602.32640HepG2EIF4A3
SDHAF2ENSG00000167985.2776.96700571.765200.442304.728803.98150HepG2ETF1
SDHAF2ENSG00000167985.2445.93030286.912200.636103.832302.63070HepG2GNB2L1
SDHAF2ENSG00000167985.2243.82130173.442200.491302.160201.31970HepG2HNRNPM
SDHAF2ENSG00000167985.2218.76850302.92210-0.469502.822002.08320HepG2ILF2
SDHAF2ENSG00000167985.2149.78840331.75610-1.147207.664605.40520HepG2ILF3
SDHAF2ENSG00000167985.2298.82360454.85810-0.606103.113902.04160HepG2KHSRP
SDHAF2ENSG00000167985.2357.79730217.934800.715103.858202.87440HepG2LARP4
SDHAF2ENSG00000167985.2648.62420479.719600.435102.568301.93490HepG2MAGOH
SDHAF2ENSG00000167985.2334.94390448.34300-0.420702.203501.66350HepG2PUF60
SDHAF2ENSG00000167985.2571.46830475.968700.263702.211501.66890HepG2PUM1
SDHAF2ENSG00000167985.2346.19930475.60060-0.458102.781302.10850HepG2PUM2
SDHAF2ENSG00000167985.2475.99810304.990800.642106.634605.75180HepG2PUS1
SDHAF2ENSG00000167985.2420.79550526.78900-0.324101.991901.44840HepG2QKI
SDHAF2ENSG00000167985.2503.79340268.873000.905804.877803.95670HepG2RAVER1
SDHAF2ENSG00000167985.2757.02320477.895200.663508.202007.41950HepG2RBM22
SDHAF2ENSG00000167985.2394.58520275.299100.519202.395801.41020HepG2RCC2
SDHAF2ENSG00000167985.2348.97370504.09440-0.530604.614603.84680HepG2RECQL
SDHAF2ENSG00000167985.2459.61410313.981000.549603.612002.84900HepG2RPLP0
SDHAF2ENSG00000167985.2238.68020162.131200.557802.500301.91330HepG2RPS19
SDHAF2ENSG00000167985.2425.39160312.649600.444102.052201.35670HepG2RPS2
SDHAF2ENSG00000167985.2242.37580341.78080-0.495802.078001.38460HepG2RPS3A
SDHAF2ENSG00000167985.2447.54980212.355301.075503.539202.77270HepG2SF3A3
SDHAF2ENSG00000167985.2390.12760274.530700.506902.384401.50100HepG2SMNDC1
SDHAF2ENSG00000167985.2270.54460165.579600.708202.785502.00190HepG2SNRNP70
SDHAF2ENSG00000167985.2735.64160539.774200.446504.768104.16170HepG2SRFBP1
SDHAF2ENSG00000167985.2346.08390429.99210-0.313202.050901.56120HepG2SRSF9
SDHAF2ENSG00000167985.2610.18990468.668000.380603.325102.77410HepG2SSB
SDHAF2ENSG00000167985.2244.96750475.03320-0.9554011.2794010.26830HepG2TAF15
SDHAF2ENSG00000167985.2306.70390186.734100.715802.331801.35170HepG2TBRG4
SDHAF2ENSG00000167985.2431.11910181.822501.2455016.6210015.33610HepG2UTP3
SDHAF2ENSG00000167985.2276.28040207.123600.415502.250301.74230HepG2ZNF622
SDHAF2ENSG00000167985.2358.76260253.729800.499602.634501.99590K562AKAP8L
SDHAF2ENSG00000167985.2878.38490542.455700.695206.733305.88290K562AQR
SDHAF2ENSG00000167985.2288.01430391.55440-0.443102.552401.30780K562BCCIP
SDHAF2ENSG00000167985.2424.60190655.23410-0.625903.452702.36110K562CELF1
SDHAF2ENSG00000167985.295.00340160.04430-0.752403.134701.71340K562DHX30
SDHAF2ENSG00000167985.2328.18870216.741200.598503.128302.28360K562EIF3G
SDHAF2ENSG00000167985.2384.41080238.418700.689105.071803.95900K562EIF4A3
SDHAF2ENSG00000167985.2374.03270238.540700.648802.525101.71570K562FIP1L1
SDHAF2ENSG00000167985.2410.65220247.946600.727806.529005.65570K562FXR1
SDHAF2ENSG00000167985.2366.40210196.244500.900702.645601.73760K562HNRNPM
SDHAF2ENSG00000167985.284.21070149.36150-0.826703.392501.73540K562ILF3
SDHAF2ENSG00000167985.2407.56040304.450600.420702.433101.57400K562MATR3
SDHAF2ENSG00000167985.2179.56760263.91150-0.555502.793401.98800K562POLR2G
SDHAF2ENSG00000167985.2484.43040296.428500.708506.658805.66340K562PTBP1
SDHAF2ENSG00000167985.2376.90770284.155300.407402.129901.39640K562RBM22
SDHAF2ENSG00000167985.2418.36540262.271000.673602.530701.75150K562RPS19
SDHAF2ENSG00000167985.2515.44360290.616000.826608.190906.98390K562SRSF1
SDHAF2ENSG00000167985.2189.44240305.59250-0.689804.831403.26860K562SRSF7
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDHAF2 is not available on ENCORE database.





18 RBPs can affect the splicing of SDHAF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESDHAF2ENSG00000167985.2chr11+612050966120532061197596611976546121341261213587-0.183000.000550.04960excludedHepG2G3BP1
SESDHAF2ENSG00000167985.2chr11+612057166120581461205475612055856121341261213477-0.054000.000400.00996excludedK562SRSF1
SESDHAF2ENSG00000167985.2chr11+612050966120532061197596611976546121341261213587-0.222000.000010.00060excludedK562SF3B4
SESDHAF2ENSG00000167985.2chr11+612050966120532061197596611976546121341261213587-0.135000.000630.04237excludedHepG2RBM22
SESDHAF2ENSG00000167985.2chr11+6120423261204432611975136119765461205096612053200.097000.000020.00580includedK562MATR3
SESDHAF2ENSG00000167985.2chr11+612054756120558561205096612053206121341261215001-0.064000.001240.02463excludedHepG2U2AF1
SESDHAF2ENSG00000167985.2chr11+6120576661205814612054756120558561213412612135310.124000.000090.02926includedK562PCBP1
SESDHAF2ENSG00000167985.2chr11+612054756120558561205096612053206121341261213814-0.194000.000000.00000excludedHepG2U2AF2
SESDHAF2ENSG00000167985.2chr11+6120507261205320611975966119765461213412612135870.137000.003090.03139includedK562AQR
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.361000.000000.00000excludedK562AQR
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.152000.000000.00095excludedHepG2SRSF7
SESDHAF2ENSG00000167985.2chr11+6120571661205814612054756120558561213412612134770.057000.000300.05703includedK562MTPAP
SESDHAF2ENSG00000167985.2chr11+612057666120581461205475612055856121341261213531-0.052000.000440.06600excludedK562LARP4
SESDHAF2ENSG00000167985.2chr11+6120423261204432611975136119765461205096612053200.065000.000940.04099includedHepG2MATR3
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.294000.000000.00000excludedK562U2AF1
SESDHAF2ENSG00000167985.2chr11+6120423261204432611975136119765461205096612053200.067000.001470.09907includedHepG2DDX6
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.201000.000060.01175excludedHepG2PCBP2
SESDHAF2ENSG00000167985.2chr11+612042326120443261197513611976546121341261213814-0.149000.001280.03117excludedHepG2SRSF1
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.141000.000010.00041excludedHepG2SF3A3
SESDHAF2ENSG00000167985.2chr11+612050966120532061197596611976546121341261213587-0.219000.000010.00028excludedK562U2AF2
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.174000.000100.00588excludedK562HNRNPU
SESDHAF2ENSG00000167985.2chr11+612050966120532061197544611976546121341261213587-0.156000.000770.03667excludedK562HNRNPK
SESDHAF2ENSG00000167985.2chr11+612054756120558561205096612053206121341261213814-0.105000.000270.01544excludedHepG2HNRNPU
SESDHAF2ENSG00000167985.2chr11+6120571661205814612054756120558561213412612134770.056000.001730.05926includedHepG2HNRNPC
SESDHAF2ENSG00000167985.2chr11+6120509661205320611975446119765461213412612135870.138000.006300.08331includedK562HNRNPC
A3SSSDHAF2ENSG00000167985.2chr11+6120507261205320612050966120532061197596611976540.135000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDHAF2 is not avaliable on ENCORE database.