RPP38

General Information

Gene Name       : RPP38
Gene ID             : ENSG00000152464.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RPP38)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPP38ENSG00000152464.1430.9027.8329.36ENCSR000AEF
HepG2RPP38ENSG00000152464.1412.4116.9114.66ENCSR985KAT
K562RPP38ENSG00000152464.1435.0939.4337.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPP38 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPP38 RNA is bound by 1 proteins.  







eCLIP assay for RPP38 is not avaliable on ENCORE database.





1 proteins are bound to RPP38 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr101514582415145882+CDS,intron-Distal3.606333.02250K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPP38 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPP38 is not available on ENCORE database.

  • 33 RBPs can affect the levels of RPP38.  








The Knockdown/knockout RNA-Seq assay for RPP38 is not available on ENCORE database.





33 RBPs can affect the gene expression of RPP38 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPP38ENSG00000152464.10348.75350221.700400.653503.140302.57830HepG2AKAP1
RPP38ENSG00000152464.10166.78810254.87760-0.611801.911401.32120HepG2AUH
RPP38ENSG00000152464.10274.97680202.029200.444602.335601.73640HepG2CELF1
RPP38ENSG00000152464.10159.32590217.22170-0.447202.037501.38690HepG2DAZAP1
RPP38ENSG00000152464.10204.0220097.336601.067605.421804.18790HepG2EIF3D
RPP38ENSG00000152464.10130.19920193.81600-0.574002.058601.50460HepG2EIF4A3
RPP38ENSG00000152464.10125.31270205.29440-0.712203.218502.34340HepG2EIF4G2
RPP38ENSG00000152464.10193.82660121.282100.676303.107502.22520HepG2EWSR1
RPP38ENSG00000152464.10158.92860225.43300-0.504302.298501.64050HepG2HNRNPF
RPP38ENSG00000152464.10119.76090184.39100-0.622602.335701.71000HepG2IGF2BP2
RPP38ENSG00000152464.10139.92970205.61800-0.555302.231801.68780HepG2PUF60
RPP38ENSG00000152464.10253.31750124.811401.021104.343803.47070HepG2RAVER1
RPP38ENSG00000152464.10204.49630139.809800.548502.316701.52350HepG2RBM15
RPP38ENSG00000152464.10321.25500244.558800.393401.775401.33650HepG2RBM22
RPP38ENSG00000152464.10148.9396094.711900.653002.297301.73210HepG2RPS19
RPP38ENSG00000152464.10119.88220197.16170-0.717803.700902.90890HepG2SLBP
RPP38ENSG00000152464.10175.46360123.186800.510202.075101.50600HepG2SMN1
RPP38ENSG00000152464.10241.13400157.386600.615402.086201.41110HepG2SNRNP70
RPP38ENSG00000152464.10152.23690221.47470-0.540802.604401.92760HepG2SRSF7
RPP38ENSG00000152464.10414.55370292.148700.504803.059401.80970K562AARS
RPP38ENSG00000152464.10781.62770559.502000.482202.646202.00680K562DDX47
RPP38ENSG00000152464.10448.34200333.325100.427602.853201.96280K562DKC1
RPP38ENSG00000152464.10327.18150195.709100.741302.269101.36820K562EIF3A
RPP38ENSG00000152464.10395.30520240.211800.718606.332405.14620K562EIF3G
RPP38ENSG00000152464.10336.24080232.261900.533602.969002.12020K562EIF4A3
RPP38ENSG00000152464.10406.02610241.540800.749206.575605.69930K562FXR1
RPP38ENSG00000152464.10166.30640319.67970-0.942806.830605.93170K562HNRNPC
RPP38ENSG00000152464.10603.50770375.328000.685105.126403.81470K562HNRNPM
RPP38ENSG00000152464.10343.33960439.54910-0.356402.396501.69730K562NSUN2
RPP38ENSG00000152464.10393.00740281.038400.483702.449801.74280K562PRPF8
RPP38ENSG00000152464.10436.47000307.188900.506702.537401.89750K562PTBP1
RPP38ENSG00000152464.10392.11380299.294300.389602.089401.56090K562RBM15
RPP38ENSG00000152464.10404.26720286.284000.497802.377701.62240K562RPS19
RPP38ENSG00000152464.10339.85030433.70140-0.351802.264201.52030K562SF3A3
RPP38ENSG00000152464.10487.60820347.635600.488003.533002.60480K562SYNCRIP
RPP38ENSG00000152464.10361.12260466.06210-0.368002.566301.87390K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPP38 is not available on ENCORE database.





1 RBPs can affect the splicing of RPP38 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPP38ENSG00000152464.10chr10+1514421615144335151392131513940815145303151462560.367000.000780.02261includedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPP38 is not avaliable on ENCORE database.