RP4-539M6.19

General Information

Gene Name : RP4-539M6.19
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP4-539M6.19)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP4-539M6.19 is not avaliable on ENCORE database.

Proteins bound to RNA

RP4-539M6.19 RNA is bound by 6 proteins.

eCLIP assay for RP4-539M6.19 is not avaliable on ENCORE database.

6 proteins are bound to RP4-539M6.19 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	30824588	30824615	+	3'-UTR,CDS	3.19141	5.58482	K562	YBX3
chr22	30824615	30824634	+	3'-UTR,CDS	3.47084	4.74241	K562	YBX3
chr22	30824503	30824710	+	3'-UTR,CDS	4.19296	6.94394	HepG2	AKAP1
chr22	30824675	30824791	+	3'-UTR,CDS	4.67974	4.93188	HepG2	UPF1
chr22	30824831	30824920	+	3'-UTR	3.84166	5.15345	K562	UPF1
chr22	30824483	30824630	+	3'-UTR,CDS	4.25625	5.47244	HepG2	LARP4
chr22	30824920	30824997	+	3'-UTR	4.55391	4.56348	K562	UPF1
chr22	30824527	30824634	+	3'-UTR,CDS	5.05296	4.44583	HepG2	UPF1
chr22	30821746	30821868	+	5'-UTR,intron-Distal	5.15721	15.17342	K562	DDX3X
chr22	30821746	30821908	+	5'-UTR,CDS,intron-Distal	4.17729	9.09300	HepG2	DDX3X
chr22	30821918	30821977	+	CDS,intron-Distal,intron-Proximal	3.40932	3.98203	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP4-539M6.19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP4-539M6.19 is not available on ENCORE database.
39 RBPs can affect the levels of RP4-539M6.19.

The Knockdown/knockout RNA-Seq assay for RP4-539M6.19 is not available on ENCORE database.

39 RBPs can affect the gene expression of RP4-539M6.19 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP4-539M6.19	ENSG00000249590.3	10.80630	47.25260	-2.12850	4.25150	3.10150	HepG2	ABCF1
RP4-539M6.19	ENSG00000249590.3	11.96250	42.58960	-1.83200	3.72160	2.10390	HepG2	ATP5C1
RP4-539M6.19	ENSG00000249590.3	10.99770	68.84520	-2.64610	2.27560	1.43000	HepG2	BCCIP
RP4-539M6.19	ENSG00000249590.3	10.28500	35.37430	-1.78220	2.73450	1.51020	HepG2	BUD13
RP4-539M6.19	ENSG00000249590.3	54.11550	15.06330	1.84490	4.26210	3.31650	HepG2	CIRBP
RP4-539M6.19	ENSG00000249590.3	0.37310	38.87770	-6.70310	11.85280	9.76140	HepG2	CPSF7
RP4-539M6.19	ENSG00000249590.3	4.53770	42.56420	-3.22960	3.42980	2.24350	HepG2	CSTF2
RP4-539M6.19	ENSG00000249590.3	3.84010	35.81830	-3.22150	5.92630	4.26240	HepG2	EIF2S2
RP4-539M6.19	ENSG00000249590.3	1.28180	16.74110	-3.70720	3.32220	2.62310	HepG2	EIF4A3
RP4-539M6.19	ENSG00000249590.3	5.45910	40.90980	-2.90570	6.48940	4.89870	HepG2	ESF1
RP4-539M6.19	ENSG00000249590.3	69.84940	16.65650	2.06810	2.23000	1.43530	HepG2	G3BP2
RP4-539M6.19	ENSG00000249590.3	26.68670	72.71330	-1.44610	2.37200	1.77030	HepG2	HNRNPA1
RP4-539M6.19	ENSG00000249590.3	45.29590	80.87680	-0.83630	1.91460	1.32630	HepG2	HNRNPC
RP4-539M6.19	ENSG00000249590.3	11.83390	32.89470	-1.47490	2.33140	1.45700	HepG2	HNRNPM
RP4-539M6.19	ENSG00000249590.3	39.83520	80.34230	-1.01210	3.23570	2.58380	HepG2	HNRNPU
RP4-539M6.19	ENSG00000249590.3	10.63930	51.65220	-2.27940	5.90240	4.88520	HepG2	IGF2BP1
RP4-539M6.19	ENSG00000249590.3	44.56690	16.03130	1.47500	2.55030	1.59410	HepG2	KHSRP
RP4-539M6.19	ENSG00000249590.3	0.00000	16.91680	-99999.99999	5.07050	4.19110	HepG2	MAGOH
RP4-539M6.19	ENSG00000249590.3	4.58260	38.57770	-3.07350	6.84480	5.62850	HepG2	MSI2
RP4-539M6.19	ENSG00000249590.3	0.85220	17.40630	-4.35230	3.83810	3.09770	HepG2	NCBP2
RP4-539M6.19	ENSG00000249590.3	0.00000	62.07160	-99999.99999	9.11590	7.09190	HepG2	NONO
RP4-539M6.19	ENSG00000249590.3	1.52020	47.76700	-4.97370	3.11880	2.01940	HepG2	PCBP2
RP4-539M6.19	ENSG00000249590.3	1.40860	38.84600	-4.78540	4.41920	2.86290	HepG2	PKM
RP4-539M6.19	ENSG00000249590.3	71.51880	117.64730	-0.71810	2.08380	1.55600	HepG2	PUF60
RP4-539M6.19	ENSG00000249590.3	47.91610	124.89830	-1.38220	4.93530	4.18980	HepG2	PUM1
RP4-539M6.19	ENSG00000249590.3	13.71650	38.75190	-1.49840	2.64050	2.02760	HepG2	QKI
RP4-539M6.19	ENSG00000249590.3	1.37650	46.16540	-5.06770	4.31390	2.98720	HepG2	RCC2
RP4-539M6.19	ENSG00000249590.3	0.00000	37.06600	-99999.99999	11.18410	10.07180	HepG2	RECQL
RP4-539M6.19	ENSG00000249590.3	5.43860	37.25080	-2.77600	3.92790	3.24390	HepG2	SF3B4
RP4-539M6.19	ENSG00000249590.3	42.14040	112.82710	-1.42080	6.21350	5.22860	HepG2	SLBP
RP4-539M6.19	ENSG00000249590.3	55.50630	116.17220	-1.06550	1.91140	1.37810	HepG2	SRSF5
RP4-539M6.19	ENSG00000249590.3	58.84050	132.10900	-1.16680	5.37160	4.55650	HepG2	SUCLG1
RP4-539M6.19	ENSG00000249590.3	0.00000	32.18560	-99999.99999	10.66350	8.93080	HepG2	SUPT6H
RP4-539M6.19	ENSG00000249590.3	20.61940	78.08020	-1.92100	5.01430	4.38230	HepG2	TIAL1
RP4-539M6.19	ENSG00000249590.3	48.60890	114.95370	-1.24180	4.59630	3.43650	HepG2	TUFM
RP4-539M6.19	ENSG00000249590.3	2.51900	40.79110	-4.01730	9.31370	8.15160	HepG2	U2AF1
RP4-539M6.19	ENSG00000249590.3	46.09880	121.68800	-1.40040	2.31590	1.55570	HepG2	UBE2L3
RP4-539M6.19	ENSG00000249590.3	5.67660	39.82550	-2.81060	3.17350	2.36220	HepG2	UCHL5
RP4-539M6.19	ENSG00000249590.3	12.17220	66.33900	-2.44630	2.66260	1.95200	HepG2	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP4-539M6.19 is not available on ENCORE database.

2 RBPs can affect the splicing of RP4-539M6.19 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	RP4-539M6.19	ENSG00000249590.3	chr22	+	30823157	30823390			30822704	30822832	30824448	30824974	-0.10100	0.00105	0.03882	excluded	K562	PRPF8
SE	RP4-539M6.19	ENSG00000249590.3	chr22	+	30823157	30823390			30822704	30822832	30824448	30824974	-0.11700	0.00022	0.03860	excluded	K562	HNRNPM

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP4-539M6.19

General Information

Functions

Localization

Domains (AlphaFold: RP4-539M6.19)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP4-539M6.19 is not avaliable on ENCORE database.

6 proteins are bound to RP4-539M6.19 RNA:

eCLIP assay for RP4-539M6.19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP4-539M6.19 is not available on ENCORE database.

39 RBPs can affect the gene expression of RP4-539M6.19 :

The Knockdown/knockout RNA-Seq assay for RP4-539M6.19 is not available on ENCORE database.

2 RBPs can affect the splicing of RP4-539M6.19 :

The Knockdown/knockout RNA-Seq assay for RP4-539M6.19 is not avaliable on ENCORE database.