RP11-613M10.9

General Information

Gene Name : RP11-613M10.9
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-613M10.9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-613M10.9 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-613M10.9 RNA is bound by 46 proteins.

eCLIP assay for RP11-613M10.9 is not avaliable on ENCORE database.

46 proteins are bound to RP11-613M10.9 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	37588734	37588930	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.82496	5.61495	HepG2	ZNF800
chr9	37588916	37588930	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.41449	4.60160	HepG2	LARP4
chr9	37588739	37588913	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.85813	20.04909	HepG2	LARP4
chr9	37783882	37783931	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78535	3.44979	HepG2	PRPF8
chr9	37588913	37588930	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.27968	7.65887	HepG2	GRWD1
chr9	37588545	37588636	-	3'-UTR,intron-Distal,intron-Proximal	3.69156	6.35062	K562	IGF2BP1
chr9	37588916	37588929	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.81197	16.13519	K562	YBX3
chr9	37588856	37588913	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.12082	8.06909	HepG2	GRWD1
chr9	37588457	37588553	-	3'-UTR,intron-Distal,intron-Proximal	3.03190	7.05804	K562	UPF1
chr9	37588795	37588854	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.94345	7.31178	K562	ZNF800
chr9	37588566	37588665	-	3'-UTR,intron-Distal,intron-Proximal	4.45993	400.00000	K562	PUM2
chr9	37588533	37588631	-	3'-UTR,intron-Distal,intron-Proximal	4.94959	5.41332	K562	PUM1
chr9	37974616	37974678	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.99596	4.21542	HepG2	SRSF1
chr9	37974570	37974632	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.25246	6.18341	HepG2	PRPF8
chr9	38067985	38068074	-	CDS,intron-Distal	3.39001	6.53290	HepG2	BUD13
chr9	38016035	38016049	-	CDS,intron-Distal	3.51593	3.05161	HepG2	PPIG
chr9	38067890	38067985	-	CDS,intron-Distal	3.55722	8.76705	HepG2	BUD13
chr9	38016017	38016074	-	CDS,intron-Distal	3.17384	5.00751	HepG2	BCLAF1
chr9	38068005	38068083	-	CDS,intron-Distal	3.37581	8.07998	HepG2	PPIG
chr9	37782031	37782120	-	CDS,intron-Distal	3.54267	6.01266	K562	LIN28B
chr9	38014490	38014551	-	intron-Distal	3.55238	4.61500	HepG2	HNRNPM
chr9	38008774	38008947	-	intron-Distal	3.82880	6.29348	HepG2	HNRNPK
chr9	37886852	37886914	-	intron-Distal	3.22888	6.06342	K562	UPF1
chr9	38058639	38058727	-	intron-Distal	3.02587	6.33844	HepG2	HNRNPU
chr9	37919793	37919848	-	3'-UTR,CDS,intron-Distal	3.10444	4.59907	HepG2	PPIG
chr9	37926769	37926852	-	intron-Distal	3.34193	4.83226	HepG2	HNRNPM
chr9	37779958	37780079	-	3'-UTR,intron-Distal	3.38262	4.51074	HepG2	HNRNPL
chr9	37885255	37885337	-	intron-Distal,intron-Proximal	3.82889	8.04798	K562	UPF1
chr9	37592473	37592498	-	CDS,intron-Distal,intron-Proximal	3.76822	36.31073	K562	DDX3X
chr9	37930356	37930472	-	intron-Distal	3.69981	3.59783	HepG2	HNRNPK
chr9	37780505	37780584	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.80399	7.83850	HepG2	SUB1
chr9	38016597	38016645	-	intron-Distal	4.03084	3.27946	HepG2	HNRNPM
chr9	37981761	37981848	-	intron-Distal	3.44761	4.43403	HepG2	CSTF2
chr9	38005123	38005205	-	intron-Distal	4.59405	5.31936	HepG2	HNRNPK
chr9	38067664	38067760	-	intron-Distal	3.20358	3.47356	HepG2	HNRNPK
chr9	38067374	38067409	-	intron-Distal	3.74856	3.17235	HepG2	HNRNPK
chr9	37780851	37780902	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.56419	6.86842	HepG2	U2AF2
chr9	38038751	38038916	-	intron-Distal	3.93773	7.31862	HepG2	HNRNPK
chr9	37784777	37784888	-	CDS,intron-Distal,intron-Proximal	4.43565	4.14689	K562	FTO
chr9	38052584	38052646	-	intron-Distal	4.07412	3.29554	HepG2	GTF2F1
chr9	37794264	37794340	-	intron-Distal	5.10267	6.97910	HepG2	PCBP2
chr9	38041376	38041436	-	intron-Distal	4.39524	5.33511	HepG2	HNRNPK
chr9	38061253	38061312	-	intron-Distal	3.22415	3.40206	HepG2	HNRNPC
chr9	37926877	37926941	-	intron-Distal	4.77489	5.72853	HepG2	HNRNPM
chr9	37956057	37956106	-	intron-Distal,intron-Proximal	3.98033	3.25678	HepG2	SF3B4
chr9	38002532	38002619	-	intron-Distal	4.29760	5.02240	HepG2	PRPF4
chr9	37885213	37885284	-	intron-Distal,intron-Proximal	3.06038	4.09267	K562	FAM120A
chr9	37592480	37592535	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.65779	5.90734	HepG2	DDX3X
chr9	37780901	37780944	-	intron-Distal,intron-Proximal	4.76817	3.55086	HepG2	RBM5
chr9	37953133	37953222	-	intron-Distal	4.28083	4.07750	HepG2	HNRNPK
chr9	38036387	38036486	-	intron-Distal	3.27711	3.11000	HepG2	HNRNPM
chr9	37918464	37918590	-	intron-Distal	3.48545	5.49850	HepG2	HNRNPL
chr9	38003275	38003355	-	intron-Distal	5.15445	8.29787	HepG2	PRPF4
chr9	37592454	37592459	-	CDS,intron-Distal	3.19108	18.83239	K562	YBX3
chr9	37784851	37784899	-	CDS,intron-Distal	3.19692	5.44096	K562	DDX3X
chr9	37919242	37919319	-	3'-UTR,intron-Distal	4.25396	4.85626	K562	TARDBP
chr9	38057414	38057472	-	intron-Distal	3.31651	6.60828	HepG2	QKI
chr9	37592416	37592423	-	CDS,intron-Distal	3.76862	39.39276	K562	YBX3
chr9	38001951	38002037	-	intron-Distal	3.67151	4.34707	HepG2	HNRNPK
chr9	37919042	37919115	-	intron-Distal,intron-Proximal	4.67934	5.63362	K562	AGGF1
chr9	37921200	37921258	-	intron-Distal	3.76060	3.16310	HepG2	CSTF2T
chr9	38009946	38010023	-	intron-Distal	3.70758	3.59771	HepG2	QKI
chr9	38014782	38014838	-	intron-Distal	3.54557	4.99837	HepG2	XPO5
chr9	37914511	37914626	-	intron-Distal	3.84702	11.25091	HepG2	HNRNPK
chr9	37592498	37592582	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.11260	46.95413	K562	DDX3X
chr9	38040872	38040922	-	intron-Distal	3.42538	3.84715	HepG2	HNRNPK
chr9	37592423	37592444	-	CDS,intron-Distal	3.63889	39.54044	K562	YBX3
chr9	37784966	37785012	-	CDS,intron-Distal	3.78115	9.88402	K562	DDX3X
chr9	38041467	38041554	-	intron-Distal	3.11137	3.23948	HepG2	HNRNPK
chr9	37882413	37882502	-	intron-Distal	6.09053	7.94582	K562	PUM2
chr9	37954824	37955016	-	intron-Distal	4.05560	4.02963	HepG2	DDX59
chr9	37592405	37592463	-	CDS,intron-Distal	3.19940	32.79604	K562	DDX3X
chr9	37785012	37785058	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.01997	4.24836	K562	DDX3X
chr9	37950992	37951050	-	intron-Distal	4.69176	6.36553	HepG2	RBFOX2
chr9	37784917	37784966	-	CDS,intron-Distal	3.01105	7.86233	K562	DDX3X
chr9	37592535	37592590	-	5'-UTR,intron-Distal,intron-Proximal	3.44430	4.61051	HepG2	DDX3X
chr9	37903963	37904026	-	5'-UTR,intron-Distal	4.16196	5.03283	HepG2	RBFOX2
chr9	37592468	37592547	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.26714	10.69984	K562	UCHL5
chr9	38003138	38003238	-	intron-Distal	3.42630	4.59945	HepG2	HNRNPK
chr9	37984931	37984966	-	intron-Distal	4.31016	4.66211	HepG2	XRN2
chr9	37904055	37904126	-	5'-UTR,intron-Distal,intron-Proximal	3.81747	3.33524	K562	DDX3X
chr9	37915476	37915528	-	intron-Distal	3.93694	4.04710	HepG2	HNRNPC
chr9	38003297	38003409	-	intron-Distal	3.08117	5.22763	HepG2	GTF2F1
chr9	38065904	38065987	-	intron-Distal	3.85945	3.48722	HepG2	PRPF4
chr9	37783050	37783146	-	intron-Distal	3.46672	3.51804	HepG2	HNRNPL
chr9	37925076	37925129	-	intron-Distal	3.16367	3.46580	HepG2	CSTF2T
chr9	37925072	37925146	-	intron-Distal	4.12148	3.01994	HepG2	GTF2F1
chr9	37592404	37592470	-	CDS,intron-Distal,intron-Proximal	3.92414	9.64287	HepG2	LARP4
chr9	37881979	37882092	-	intron-Distal	3.33695	4.41699	K562	ZC3H11A
chr9	37958809	37958876	-	intron-Distal	3.07332	3.37567	HepG2	HNRNPK
chr9	38059455	38059539	-	intron-Distal	3.92632	6.74598	HepG2	QKI
chr9	37780500	37780570	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.31375	18.69899	K562	PABPC4
chr9	38021779	38021852	-	intron-Distal	4.10538	3.18711	HepG2	ILF3
chr9	37888152	37888202	-	CDS,intron-Distal	3.55788	4.22460	K562	RBM15
chr9	38015914	38015954	-	intron-Distal,intron-Proximal	4.25219	5.47493	HepG2	BUD13
chr9	37979858	37979920	-	intron-Distal	4.29925	5.84425	HepG2	CSTF2
chr9	38003355	38003405	-	intron-Distal	4.08040	7.47076	HepG2	PRPF4
chr9	37948555	37948621	-	intron-Distal,intron-Proximal	3.83399	7.06478	HepG2	RBM22
chr9	37592407	37592443	-	CDS,intron-Distal	3.15930	6.66900	HepG2	GRWD1
chr9	37592444	37592454	-	CDS,intron-Distal	3.20656	23.07972	K562	YBX3
chr9	37991900	37991973	-	intron-Distal	3.14363	4.35585	HepG2	RBFOX2
chr9	37784784	37785000	-	CDS,intron-Distal,intron-Proximal	3.02734	5.18108	K562	HNRNPM
chr9	37954910	37955026	-	intron-Distal	4.08819	6.99640	HepG2	HNRNPK
chr9	38032598	38032690	-	intron-Distal	3.81092	3.27987	HepG2	TAF15
chr9	37592407	37592410	-	CDS,intron-Distal	3.60312	17.27582	K562	YBX3
chr9	37779956	37780086	-	3'-UTR,intron-Distal	3.52291	5.45345	K562	HNRNPL
chr9	38061989	38062097	-	intron-Distal	3.74837	3.89405	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-613M10.9 is not avaliable on ENCORE database.

Summary

Diffrential Expression

The Knockdown/knockout assay for RP11-613M10.9 is not available on ENCORE database.
No RBPs affect the gene expression of RP11-613M10.9 on ENCORE database.

RP11-613M10.9

General Information

Functions

Localization

Domains (AlphaFold: RP11-613M10.9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-613M10.9 is not avaliable on ENCORE database.

46 proteins are bound to RP11-613M10.9 RNA:

eCLIP assay for RP11-613M10.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-613M10.9 is not available on ENCORE database.

No RBPs affect the gene expression of RP11-613M10.9 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-613M10.9 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP11-613M10.9 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-613M10.9 is not avaliable on ENCORE database.