RP11-45M22.4

General Information

Gene Name       : RP11-45M22.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-45M22.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-45M22.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-45M22.4 RNA is bound by 22 proteins.  







eCLIP assay for RP11-45M22.4 is not avaliable on ENCORE database.





22 proteins are bound to RP11-45M22.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr171711978817119866-3'-UTR,CDS,intron-Distal,intron-Proximal4.9507917.10376K562SF3B4
chr171710614017106194-3'-UTR,CDS,intron-Distal3.864373.05875K562RBM15
chr171711979717119879-3'-UTR,CDS,intron-Distal,intron-Proximal4.157713.98427HepG2SF3B4
chr171711966717119696-3'-UTR,CDS,intron-Distal,intron-Proximal5.728358.88118K562AQR
chr171711862617118681-3'-UTR,CDS,intron-Distal,intron-Proximal4.787936.27794HepG2SF3A3
chr171711857917118616-3'-UTR,CDS,intron-Distal3.238873.65452K562BUD13
chr171713145417131525-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.870983.05889HepG2SF3B4
chr171713143817131526-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal6.4613346.26462K562SF3B4
chr171713142717131544-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.839927.49832K562SMNDC1
chr171713605517136114-5'-UTR,intron-Distal,intron-Proximal3.954758.17589HepG2PRPF8
chr171713515217135223-5'-UTR,intron-Distal,intron-Proximal3.841509.18050K562BUD13
chr171713140217131546-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.0802812.29520K562BUD13
chr171714009917140237-5'-UTR,intron-Distal4.8083525.42691K562EFTUD2
chr171713514017135245-5'-UTR,intron-Distal,intron-Proximal4.1163814.76150K562AQR
chr171712235017122441-CDS,intron-Distal,intron-Proximal4.359824.34038HepG2BCLAF1
chr171711571917115777-3'-UTR,intron-Distal3.848127.11398HepG2HNRNPC
chr171712020217120296-intron-Distal,intron-Proximal3.2550910.05781K562AATF
chr171712015517120202-intron-Distal,intron-Proximal4.842566.02937K562AATF
chr171712722617127278-CDS,intron-Distal,intron-Proximal4.525913.96990K562BUD13
chr171712476517124835-CDS,intron-Distal,intron-Proximal3.945567.64728K562AQR
chr171712015117120212-intron-Distal,intron-Proximal4.125508.40726K562SMNDC1
chr171712476017124865-CDS,intron-Distal,intron-Proximal3.7970015.44663HepG2PRPF8
chr171712742017127502-CDS,intron-Distal,intron-Proximal5.181839.77805HepG2SF3B4
chr171712323817123306-intron-Distal4.013063.59941K562UCHL5
chr171713112517131204-CDS,intron-Distal,intron-Proximal4.471798.79285K562AQR
chr171712958617129652-CDS,intron-Distal,intron-Proximal4.101919.18050K562BUD13
chr171712434317124387-intron-Distal,intron-Proximal4.116153.97018HepG2HNRNPM
chr171713569117135758-intron-Distal3.881903.34627K562HNRNPK
chr171711614217116199-3'-UTR,intron-Distal5.039627.21253K562UPF1
chr171712021817120274-intron-Distal,intron-Proximal5.4796521.58982HepG2DKC1
chr171712032617120334-intron-Distal,intron-Proximal6.5020516.52001K562ZRANB2
chr171712478317124846-CDS,intron-Distal,intron-Proximal4.366974.42734K562UCHL5
chr171713604117136056-intron-Distal,intron-Proximal6.0903112.64691K562AQR
chr171711963817119692-intron-Distal,intron-Proximal3.526554.54206HepG2PRPF8
chr171711577717115792-3'-UTR,intron-Distal3.310754.48901HepG2HNRNPC
chr171713504117135085-intron-Distal,intron-Proximal4.954493.65355K562EFTUD2
chr171711964917119667-intron-Distal,intron-Proximal5.875769.41643K562AQR
chr171712450517124550-3'-UTR,intron-Distal3.502433.84001K562HNRNPM
chr171713551917135536-intron-Distal3.127683.26275K562BUD13
chr171712027617120322-intron-Distal,intron-Proximal6.6420138.82635K562ZRANB2
chr171713605617136065-intron-Distal,intron-Proximal7.6833137.83487K562AQR
chr171713991317139985-intron-Distal3.531603.27704K562HNRNPM
chr171711864017118701-intron-Distal,intron-Proximal4.522646.53298K562SF3B4
chr171713993617139988-intron-Distal3.265933.42785HepG2HNRNPM
chr171713175717131819-intron-Distal3.266593.80983K562TIA1
chr171710926117109332-CDS,intron-Distal5.565705.78809K562GEMIN5
chr171712328017123320-intron-Distal3.275873.75245K562BUD13
chr171712743917127493-CDS,intron-Distal,intron-Proximal5.030657.50129HepG2SF3A3
chr171713606517136101-intron-Distal,intron-Proximal6.7383037.50196K562AQR
chr171712483517124852-CDS,intron-Distal,intron-Proximal3.623634.41130K562AQR
chr171712247717122645-CDS,intron-Distal,intron-Proximal4.5781614.75387K562SF3B4
chr171712475017124816-CDS,intron-Distal,intron-Proximal4.969434.26208K562SF3B4
chr171712743117127505-CDS,intron-Distal,intron-Proximal6.041639.95947K562SF3B4
chr171712398217124028-intron-Distal4.442673.79026K562HNRNPM
chr171712461317124682-3'-UTR,intron-Distal3.050723.40058K562PRPF8
chr171713256917132621-intron-Distal4.411837.14115HepG2XPO5
chr171712716817127238-CDS,intron-Distal,intron-Proximal3.136867.13900K562AQR
chr171712944317129536-CDS,intron-Distal,intron-Proximal4.1002710.32997HepG2PRPF8
chr171713602017136041-intron-Distal,intron-Proximal5.172066.75320K562AQR
chr171712936417129429-intron-Distal,intron-Proximal5.232096.15027K562EFTUD2
chr171712473617124868-CDS,intron-Distal,intron-Proximal3.5751914.90738K562BUD13
chr171712595117125984-CDS,intron-Distal,intron-Proximal3.692203.99381K562BUD13
chr171712945417129518-CDS,intron-Distal,intron-Proximal4.223463.85435K562PRPF8
chr171712027417120288-intron-Distal,intron-Proximal5.4617016.45291HepG2DKC1
chr171714010117140183-intron-Distal3.385063.72952K562EXOSC5
chr171711646117116504-3'-UTR,intron-Distal4.121373.31330K562UPF1
chr171711578317115794-3'-UTR,intron-Distal3.231564.14815K562HNRNPC
chr171712028817120339-intron-Distal,intron-Proximal4.903828.17426HepG2DKC1
chr171712476117124847-CDS,intron-Distal,intron-Proximal3.976937.78906K562GPKOW
chr171714009817140180-intron-Distal4.404409.23607HepG2EFTUD2
chr171711570617115792-3'-UTR,intron-Distal3.0507015.78252K562UPF1
chr171713237117132483-intron-Distal4.308483.82414HepG2HNRNPK
chr171712474117124801-CDS,intron-Distal,intron-Proximal3.788114.95247K562PRPF8
chr171712022117120262-intron-Distal,intron-Proximal5.071049.10971K562ZRANB2
chr171713226617132361-intron-Distal3.986636.20952K562HNRNPK
chr171714010017140214-intron-Distal3.234655.47590K562PRPF8
chr171713504117135081-intron-Distal,intron-Proximal4.549854.48002K562AQR
chr171713154617131609-intron-Distal,intron-Proximal3.796205.29272K562BUD13
chr171712473717124863-CDS,intron-Distal,intron-Proximal3.413037.31683HepG2BUD13
chr171712958717129655-CDS,intron-Distal,intron-Proximal3.951964.69223K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-45M22.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-45M22.4 is not available on ENCORE database.

  • 18 RBPs can affect the levels of RP11-45M22.4.  








The Knockdown/knockout RNA-Seq assay for RP11-45M22.4 is not available on ENCORE database.





18 RBPs can affect the gene expression of RP11-45M22.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-45M22.4ENSG00000264187.11.4125023.15210-4.034904.334003.31910HepG2DDX19B
RP11-45M22.4ENSG00000264187.120.183703.082802.710802.830502.20630HepG2DDX6
RP11-45M22.4ENSG00000264187.12.7073023.90200-3.142203.231402.17850HepG2HDGF
RP11-45M22.4ENSG00000264187.112.471700.0000099999.999901.839901.34040HepG2PUF60
RP11-45M22.4ENSG00000264187.16.4199025.49110-1.989402.078501.52660HepG2PUS1
RP11-45M22.4ENSG00000264187.118.293200.0000099999.999904.611903.74820HepG2UPF1
RP11-45M22.4ENSG00000264187.112.595000.0000099999.999903.991403.36700HepG2ZNF622
RP11-45M22.4ENSG00000264187.125.223702.943003.099303.418402.03300K562APOBEC3C
RP11-45M22.4ENSG00000264187.18.160000.0000099999.999902.304201.35660K562CSTF2
RP11-45M22.4ENSG00000264187.10.0000010.48750-99999.999993.454001.44060K562FUBP3
RP11-45M22.4ENSG00000264187.10.0000011.56080-99999.999993.557702.88480K562FXR1
RP11-45M22.4ENSG00000264187.125.111600.458205.776207.063904.09960K562HLTF
RP11-45M22.4ENSG00000264187.110.564000.0000099999.999903.040301.94600K562IGF2BP2
RP11-45M22.4ENSG00000264187.10.0000011.10070-99999.999993.314201.95750K562NCBP2
RP11-45M22.4ENSG00000264187.127.281003.429502.991703.424101.83090K562PNPT1
RP11-45M22.4ENSG00000264187.118.396100.0000099999.999904.268802.91770K562SRSF4
RP11-45M22.4ENSG00000264187.122.982703.263702.815903.445901.99680K562WRN
RP11-45M22.4ENSG00000264187.119.093203.121002.612902.845201.96750K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-45M22.4 is not available on ENCORE database.





2 RBPs can affect the splicing of RP11-45M22.4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-45M22.4ENSG00000264187.1chr17-171196931711981717118498171186301712038217120552-0.231000.004010.03883excludedK562AQR
SERP11-45M22.4ENSG00000264187.1chr17-171351071713519617131303171314751713610117136215-0.214000.000980.01671excludedK562PUS1
A3SSRP11-45M22.4ENSG00000264187.1chr17-1711969317119882171196931711981717120382171205520.361000.000000.00000longerK562AQR
A3SSRP11-45M22.4ENSG00000264187.1chr17-1712038217120584171203821712049617122332171223680.292000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-45M22.4 is not avaliable on ENCORE database.