RP11-212D19.4

General Information

Gene Name : RP11-212D19.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-212D19.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-212D19.4 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-212D19.4 RNA is bound by 15 proteins.

eCLIP assay for RP11-212D19.4 is not avaliable on ENCORE database.

15 proteins are bound to RP11-212D19.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	114311374	114311458	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00930	3.39306	HepG2	GRWD1
chr11	114311376	114311421	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.24682	4.89070	K562	UCHL5
chr11	114311377	114311403	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.85588	9.77030	K562	DDX3X
chr11	114314591	114314643	+	3'-UTR,CDS,intron-Distal	4.10319	3.88696	K562	GRWD1
chr11	114273616	114273640	+	CDS,intron-Distal,intron-Proximal	4.40824	4.77152	K562	IGF2BP1
chr11	114276427	114276454	+	3'-UTR,CDS,intron-Proximal	4.16717	3.50232	K562	IGF2BP1
chr11	114273561	114273616	+	CDS,intron-Distal	3.67334	4.29472	K562	IGF2BP1
chr11	114310239	114310397	+	5'-UTR,CDS,intron-Distal	3.55553	5.77304	HepG2	GRSF1
chr11	114310259	114310382	+	CDS,intron-Distal	3.83599	11.98644	K562	GEMIN5
chr11	114310396	114310406	+	CDS,intron-Distal,intron-Proximal	5.33115	7.81430	K562	AQR
chr11	114310372	114310399	+	CDS,intron-Distal,intron-Proximal	3.37150	5.18420	K562	FTO
chr11	114310449	114310585	+	intron-Distal,intron-Proximal	3.96181	7.33509	K562	EFTUD2
chr11	114310481	114310538	+	intron-Distal,intron-Proximal	3.55624	6.26812	HepG2	EFTUD2
chr11	114310413	114310470	+	intron-Distal,intron-Proximal	4.23465	4.21433	K562	PRPF8
chr11	114310405	114310459	+	intron-Distal,intron-Proximal	5.06959	4.52669	HepG2	EFTUD2
chr11	114310389	114310463	+	CDS,intron-Distal,intron-Proximal	4.37954	8.11807	HepG2	PRPF8
chr11	114310284	114310367	+	CDS,intron-Distal	4.09368	53.23616	K562	DDX3X
chr11	114310200	114310257	+	5'-UTR,CDS,intron-Distal	5.54250	10.32974	HepG2	DDX3X
chr11	114310260	114310399	+	CDS,intron-Distal,intron-Proximal	3.04623	5.09666	K562	FUS
chr11	114310378	114310397	+	CDS,intron-Distal	4.73392	13.89420	K562	DDX3X
chr11	114310257	114310361	+	CDS,intron-Distal	4.11423	18.21994	HepG2	DDX3X
chr11	114310206	114310284	+	5'-UTR,CDS,intron-Distal	4.80373	33.54068	K562	DDX3X
chr11	114314358	114314475	+	intron-Distal	3.10155	4.74253	K562	KHSRP
chr11	114271571	114271673	+	intron-Distal,intron-Proximal	3.36829	5.88228	K562	TIA1
chr11	114310282	114310337	+	CDS,intron-Distal	5.47398	9.31833	K562	DROSHA
chr11	114310266	114310415	+	CDS,intron-Distal,intron-Proximal	3.29966	4.36184	HepG2	PRPF4
chr11	114310406	114310445	+	intron-Distal,intron-Proximal	5.65307	9.95272	K562	AQR
chr11	114310379	114310397	+	CDS,intron-Distal	4.52103	4.42734	K562	UCHL5
chr11	114310270	114310372	+	CDS,intron-Distal	3.32434	25.94409	K562	FTO
chr11	114271514	114271562	+	intron-Proximal	3.99562	3.12843	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-212D19.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-212D19.4 is not available on ENCORE database.
24 RBPs can affect the levels of RP11-212D19.4.

The Knockdown/knockout RNA-Seq assay for RP11-212D19.4 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-212D19.4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-212D19.4	ENSG00000255663.1	28.93260	2.81820	3.35980	5.16570	3.75580	HepG2	AKAP8
RP11-212D19.4	ENSG00000255663.1	0.00000	24.13930	-99999.99999	2.41440	1.85080	HepG2	BOP1
RP11-212D19.4	ENSG00000255663.1	0.00000	25.16970	-99999.99999	2.47560	1.55220	HepG2	DDX59
RP11-212D19.4	ENSG00000255663.1	0.00000	22.19390	-99999.99999	2.26660	1.35510	HepG2	FTO
RP11-212D19.4	ENSG00000255663.1	22.54250	0.00000	99999.99990	5.46060	4.28070	HepG2	LARP4
RP11-212D19.4	ENSG00000255663.1	20.10730	2.91570	2.78570	3.20990	1.66840	HepG2	NKRF
RP11-212D19.4	ENSG00000255663.1	31.57610	1.21240	4.70280	5.01530	2.50600	HepG2	RBM17
RP11-212D19.4	ENSG00000255663.1	0.00000	25.53730	-99999.99999	2.48710	1.54360	HepG2	SRSF3
RP11-212D19.4	ENSG00000255663.1	29.77320	3.05580	3.28430	5.57330	3.83250	HepG2	SSRP1
RP11-212D19.4	ENSG00000255663.1	34.72310	3.00200	3.53180	2.89710	1.80460	HepG2	TBRG4
RP11-212D19.4	ENSG00000255663.1	49.94130	1.22470	5.34960	3.42100	2.31950	HepG2	U2AF2
RP11-212D19.4	ENSG00000255663.1	35.04090	0.00000	99999.99990	11.66470	10.40990	HepG2	UPF1
RP11-212D19.4	ENSG00000255663.1	57.70190	0.00000	99999.99990	16.68560	15.40480	K562	AQR
RP11-212D19.4	ENSG00000255663.1	38.61350	4.39950	3.13360	3.84580	2.55940	K562	CCAR1
RP11-212D19.4	ENSG00000255663.1	33.61500	4.70000	2.83830	4.91490	2.39180	K562	CPSF7
RP11-212D19.4	ENSG00000255663.1	25.47340	4.64630	2.45470	3.75340	1.54300	K562	DDX1
RP11-212D19.4	ENSG00000255663.1	29.26500	4.92990	2.56950	4.30360	2.58500	K562	DHX30
RP11-212D19.4	ENSG00000255663.1	31.74910	4.47310	2.82730	2.35290	1.43250	K562	EIF3A
RP11-212D19.4	ENSG00000255663.1	12.18880	1.67790	2.86080	2.21440	1.47660	K562	EIF4A3
RP11-212D19.4	ENSG00000255663.1	16.11180	1.94930	3.04700	2.55680	1.83570	K562	PRPF8
RP11-212D19.4	ENSG00000255663.1	33.31310	4.70250	2.82450	5.19380	2.44700	K562	RBFOX2
RP11-212D19.4	ENSG00000255663.1	21.37750	0.00000	99999.99990	5.62960	3.71630	K562	SF1
RP11-212D19.4	ENSG00000255663.1	16.91650	0.00000	99999.99990	5.18780	3.86350	K562	TIAL1
RP11-212D19.4	ENSG00000255663.1	14.93720	0.00000	99999.99990	5.05040	3.96940	K562	U2AF2
RP11-212D19.4	ENSG00000255663.1	17.67290	0.00000	99999.99990	3.60290	1.60130	K562	XPO5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-212D19.4 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-212D19.4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
SE	RP11-212D19.4	ENSG00000255663.1	chr11	+	114278166	114278302			114276427	114276521	114302250	114302387	-0.41000	excluded	K562	AQR
MXE	RP11-212D19.4	ENSG00000255663.1	chr11	+	114302250	114302387	114311377	114311461	114276427	114276521	114314577	114314654	0.15300	1included	K562	AQR
MXE	RP11-212D19.4	ENSG00000255663.1	chr11	+	114284677	114284846	114311377	114311461	114276427	114276521	114314577	114314654	0.09000	1included	K562	AQR
MXE	RP11-212D19.4	ENSG00000255663.1	chr11	+	114278166	114278302	114284677	114284846	114276427	114276521	114302250	114302387	-0.21100	2included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-212D19.4

General Information

Functions

Localization

Domains (AlphaFold: RP11-212D19.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-212D19.4 is not avaliable on ENCORE database.

15 proteins are bound to RP11-212D19.4 RNA:

eCLIP assay for RP11-212D19.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-212D19.4 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-212D19.4 :

The Knockdown/knockout RNA-Seq assay for RP11-212D19.4 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-212D19.4 :

The Knockdown/knockout RNA-Seq assay for RP11-212D19.4 is not avaliable on ENCORE database.