LA16c-431H6.6

General Information

Gene Name       : LA16c-431H6.6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LA16c-431H6.6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LA16c-431H6.6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LA16c-431H6.6 RNA is bound by 30 proteins.  







eCLIP assay for LA16c-431H6.6 is not avaliable on ENCORE database.





30 proteins are bound to LA16c-431H6.6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1617151321715190+3'-UTR,CDS,intron-Proximal4.093254.75655HepG2PRPF8
chr1617191651719177+3'-UTR,CDS,intron-Proximal5.385418.43521K562AQR
chr1617127751712830+3'-UTR,CDS,intron-Distal4.616744.67689HepG2PPIG
chr1617354641735525+3'-UTR,5'-UTR,CDS,intron-Distal3.282445.74981HepG2GRWD1
chr1617238211723894+3'-UTR,CDS,intron-Proximal3.908234.69223K562SF3B4
chr1617206271720693+3'-UTR,CDS,intron-Proximal5.530168.43521K562AQR
chr1617126621712719+3'-UTR,CDS,intron-Proximal3.318084.78164HepG2PRPF8
chr1617355251735590+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.481638.71420HepG2GRWD1
chr1617174001717446+3'-UTR,CDS,intron-Distal,intron-Proximal4.623638.01338K562AQR
chr1617173631717445+3'-UTR,CDS,intron-Distal,intron-Proximal5.4646511.76457HepG2PRPF8
chr1617244061724494+3'-UTR4.8380525.02870HepG2XPO5
chr1617127731712878+3'-UTR,CDS,intron-Distal,intron-Proximal4.1739813.40522HepG2PRPF8
chr1617354631735525+3'-UTR,5'-UTR,CDS,intron-Distal3.061407.60260K562ZNF622
chr1617191371719236+3'-UTR,CDS,intron-Proximal3.937786.95612HepG2PRPF8
chr1617245961724657+3'-UTR4.066694.03833K562HNRNPM
chr1617354371735466+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.4650910.93922K562DDX3X
chr1617031061703144+5'-UTR,CDS3.909843.04254K562UCHL5
chr1617031461703202+5'-UTR,CDS,intron-Proximal4.5700010.09745HepG2PRPF8
chr1617051571705222+5'-UTR,CDS,intron-Proximal3.569205.47851K562SF3B4
chr1617031531703203+5'-UTR,CDS,intron-Proximal4.768385.17615K562AQR
chr1617024961702569+5'-UTR,CDS,intron-Proximal3.784184.79276K562ZNF622
chr1617066431706703+5'-UTR,CDS,intron-Proximal5.159767.58445K562RBM15
chr1617030401703148+5'-UTR,CDS3.543145.14253HepG2GRWD1
chr1617051531705231+5'-UTR,CDS,intron-Proximal4.721835.17615K562AQR
chr1616823551682418+CDS,intron-Proximal3.763653.88924K562PRPF8
chr1616878321687898+CDS4.779214.21675K562ZNF622
chr1616878241687868+CDS,intron-Proximal3.821645.80295HepG2PPIG
chr1616911171691179+CDS,intron-Proximal3.504974.57435K562SF3B4
chr1616822121682365+CDS,intron-Proximal3.028018.34536K562ZNF622
chr1616878601687910+CDS,intron-Proximal3.905205.77244K562UCHL5
chr1616823541682409+CDS,intron-Proximal5.7579012.15317HepG2PRPF8
chr1616911421691183+CDS3.292393.02345K562ZNF622
chr1616823461682370+CDS,intron-Proximal4.313734.08604HepG2PPIG
chr1617276781727876+3'-UTR,intron-Distal7.5277620.44795K562PUM2
chr1617284471728570+intron-Distal,intron-Proximal4.081838.42501K562TIA1
chr1617287941728909+intron-Distal5.198709.05671K562NONO
chr1616961701696252+intron-Distal4.818716.88558K562HNRNPM
chr1617284431728548+intron-Distal,intron-Proximal4.865875.80843K562CSTF2T
chr1617268391726919+3'-UTR,intron-Distal4.714414.78076K562HNRNPM
chr1617287711728823+intron-Distal3.647725.14244K562DROSHA
chr1616918721692051+intron-Distal3.502314.59945HepG2HNRNPK
chr1617224421722520+intron-Distal3.740735.82228HepG2RBFOX2
chr1617284201728533+intron-Distal,intron-Proximal3.405908.12472HepG2CSTF2T
chr1617019861702102+intron-Distal3.392127.26179K562HNRNPL
chr1616962521696367+intron-Distal5.0601013.36379K562HNRNPM
chr1616945281694588+intron-Distal4.260974.78076K562HNRNPM
chr1617284431728569+intron-Distal,intron-Proximal5.8316117.15870HepG2EFTUD2
chr1617152581715329+intron-Distal4.508394.96013K562PRPF8
chr1617201141720167+intron-Distal4.575404.59504K562RBFOX2
chr1617061631706221+CDS,intron-Distal3.354963.86355HepG2PPIG
chr1617198821719931+intron-Distal4.074153.25414K562RBFOX2
chr1616940611694112+intron-Distal3.118213.15041K562EXOSC5
chr1617060221706059+CDS,intron-Distal,intron-Proximal4.204863.48187K562RBM15
chr1616962441696305+intron-Distal5.053577.06134K562EXOSC5
chr1617284641728528+intron-Distal4.280525.32062K562EFTUD2
chr1616902791690347+intron-Distal3.977533.16028HepG2SUGP2
chr1617287001728758+intron-Distal4.386924.42691HepG2GTF2F1
chr1617284421728523+intron-Distal,intron-Proximal3.480973.41462K562EWSR1
chr1617203731720449+intron-Distal4.464415.15564HepG2FAM120A
chr1617198761719904+intron-Distal3.788083.14375HepG2RBFOX2
chr1617132121713269+intron-Distal5.531568.51022HepG2XPO5
chr1617286981728793+intron-Distal3.882435.37486K562NONO
chr1617289681729006+intron-Distal3.716973.06347K562NONO
chr1617282991728361+5'-UTR,CDS,intron-Distal,intron-Proximal4.697875.38274HepG2NCBP2
chr1616943651694411+intron-Distal4.040156.98528HepG2HNRNPM
chr1617287691728849+intron-Distal3.149874.98353HepG2CSTF2T
chr1617015881701649+intron-Distal4.353124.71638K562HNRNPL
chr1617302591730299+intron-Distal3.001893.14895K562NONO
chr1617291001729163+intron-Distal4.308134.94603K562CSTF2T
chr1616943521694465+intron-Distal5.9470416.28198K562HNRNPM
chr1617015401701588+intron-Distal4.310265.63065K562HNRNPL
chr1616938411693949+intron-Distal3.485743.39857HepG2HNRNPM
chr1617203461720457+intron-Distal6.7108330.14433HepG2RBFOX2
chr1617285071728544+intron-Distal4.094413.57432K562NONO
chr1617346871734727+intron-Distal4.507133.30425K562LIN28B
chr1617193471719402+intron-Distal4.575404.59504K562RBFOX2
chr1617284321728536+intron-Distal,intron-Proximal3.845695.26540HepG2GTF2F1
chr1616945531694649+intron-Distal4.788735.44433K562EXOSC5
chr1617064441706533+CDS,intron-Distal4.226846.37184K562RBM15
chr1617203661720475+intron-Distal4.738269.64268K562RBFOX2
chr1616908531690946+intron-Distal3.321564.08528HepG2SUGP2
chr1617268371726886+3'-UTR,intron-Distal3.425093.66782HepG2HNRNPM
chr1617288351728902+intron-Distal4.578736.03534K562DDX51
chr1617283261728398+CDS,intron-Distal,intron-Proximal4.2139815.70810HepG2PRPF8
chr1617205411720601+intron-Distal,intron-Proximal3.267765.38345HepG2RBFOX2
chr1617267051726825+3'-UTR,intron-Distal3.619236.58367HepG2HNRNPM
chr1617282881728358+5'-UTR,CDS,intron-Distal,intron-Proximal6.5729515.97037K562DDX3X
chr1617285331728651+intron-Distal3.703058.15854HepG2CSTF2T
chr1617203771720468+intron-Distal4.444863.85148K562GTF2F1
chr1616962141696309+intron-Distal3.827367.58130HepG2HNRNPM
chr1617287061728747+intron-Distal3.837573.43867K562CSTF2T
chr1616943191694352+intron-Distal4.053453.03671K562HNRNPM
chr1617021521702205+intron-Distal3.871393.80954K562HNRNPL
chr1617197781719825+intron-Distal3.257383.48223HepG2RBFOX2
chr1617031591703213+intron-Proximal4.384434.21433K562PRPF8
chr1617353551735432+5'-UTR,intron-Distal,intron-Proximal4.527455.91381K562LIN28B
chr1617174461717497+intron-Distal,intron-Proximal3.018343.49168K562AQR
chr1617191971719240+intron-Proximal3.839684.86737HepG2RBM22
chr1617191771719245+intron-Proximal5.8695511.25363K562AQR
chr1617191891719247+intron-Proximal3.467543.51708K562RBFOX2
chr1617053011705352+intron-Proximal3.768384.49024K562AQR
chr1617191911719254+intron-Proximal3.391473.01994K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LA16c-431H6.6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LA16c-431H6.6 is not available on ENCORE database.

  • 13 RBPs can affect the levels of LA16c-431H6.6.  








The Knockdown/knockout RNA-Seq assay for LA16c-431H6.6 is not available on ENCORE database.





13 RBPs can affect the gene expression of LA16c-431H6.6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LA16c-431H6.6ENSG00000261732.115.732603.292902.256201.860301.36210HepG2EIF2S1
LA16c-431H6.6ENSG00000261732.124.493303.545502.788202.966402.25550HepG2EIF4B
LA16c-431H6.6ENSG00000261732.122.556906.597301.773502.026501.50280HepG2PUM1
LA16c-431H6.6ENSG00000261732.139.5036010.983401.846602.179901.31640HepG2U2AF2
LA16c-431H6.6ENSG00000261732.123.5712059.04260-1.324703.112901.85040K562CCDC124
LA16c-431H6.6ENSG00000261732.111.5232042.96360-1.898604.086903.31600K562DDX47
LA16c-431H6.6ENSG00000261732.17.4815024.83580-1.731001.981901.30320K562HSPD1
LA16c-431H6.6ENSG00000261732.193.9443020.288102.211104.088602.82590K562PABPN1
LA16c-431H6.6ENSG00000261732.1120.1338050.978101.236604.725004.04000K562PUS1
LA16c-431H6.6ENSG00000261732.161.4932018.536701.729902.788801.57780K562SF1
LA16c-431H6.6ENSG00000261732.165.4899022.573101.536603.027201.63580K562SFPQ
LA16c-431H6.6ENSG00000261732.171.5504021.315201.747003.758202.24290K562SNRNP200
LA16c-431H6.6ENSG00000261732.17.7899030.05530-1.947902.945502.09690K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LA16c-431H6.6 is not available on ENCORE database.





9 RBPs can affect the splicing of LA16c-431H6.6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELA16c-431H6.6ENSG00000261732.1chr16+171733517174011716422171660117179621718194-0.462000.001310.02574excludedHepG2U2AF1
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.485000.000220.00573excludedHepG2U2AF1
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.322000.000270.06903excludedK562WDR43
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.408000.000660.02797excludedK562FXR1
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.343000.004890.06119excludedK562PUS1
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.575000.001880.09351excludedHepG2FTO
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.381000.001130.05290excludedHepG2PCBP1
SELA16c-431H6.6ENSG00000261732.1chr16+171607317161781715057171513917164221716601-0.249000.000130.03142excludedK562EIF4G2
A5SSLA16c-431H6.6ENSG00000261732.1chr16+1717962171819417179621718185171900117191660.253000.001450.02568longerK562AQR
A5SSLA16c-431H6.6ENSG00000261732.1chr16+1717962171819417179621718185171900117191660.249000.000040.02131longerHepG2DDX59

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LA16c-431H6.6 is not avaliable on ENCORE database.