CLHC1

General Information

Gene Name       : CLHC1
Gene ID             : ENSG00000162994.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLHC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLHC1ENSG00000162994.152.502.392.45ENCSR000AEF
HepG2CLHC1ENSG00000162994.154.666.075.37ENCSR985KAT
K562CLHC1ENSG00000162994.153.703.943.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLHC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLHC1 RNA is bound by 13 proteins.  







eCLIP assay for CLHC1 is not avaliable on ENCORE database.





13 proteins are bound to CLHC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr25540771455407813-3'-UTR,CDS,intron-Distal3.791074.09885HepG2BCLAF1
chr25545930455459418-5'-UTR,intron-Distal,intron-Proximal3.914946.62281HepG2NCBP2
chr25543336955433414-5'-UTR,CDS,intron-Distal,intron-Proximal5.119063.37645HepG2PRPF8
chr25545774755457813-intron-Distal4.160218.31041HepG2SUGP2
chr25545658055456655-intron-Distal5.343327.41017K562PTBP1
chr25541554555415644-intron-Distal3.392627.21887K562KHSRP
chr25542808055428202-intron-Distal3.381964.10380HepG2MATR3
chr25545862955458688-intron-Distal3.439703.10961HepG2MATR3
chr25545794555458017-intron-Distal3.036016.22873HepG2SUGP2
chr25545860355458699-intron-Distal4.7842113.23682HepG2QKI
chr25545878455458882-intron-Distal5.8690016.07608HepG2LIN28B
chr25545868855458753-intron-Distal4.583013.62238HepG2MATR3
chr25545851255458583-intron-Distal4.482535.59955HepG2SUGP2
chr25545027855450366-intron-Distal4.3373111.15306HepG2CSTF2
chr25545751655457638-intron-Distal4.504959.55185HepG2HNRNPL
chr25545651355456651-intron-Distal4.4086111.97743HepG2PTBP1
chr25545883355458876-intron-Distal5.2490011.45916K562LIN28B
chr25545877955458833-intron-Distal5.9863418.66149K562LIN28B
chr25545860755458705-intron-Distal4.010165.65979HepG2PTBP1
chr25545795455458017-intron-Distal3.890494.61322HepG2MATR3
chr25545619155456291-intron-Distal3.183463.21744HepG2HNRNPC
chr25543480855434869-intron-Distal4.363373.79000HepG2U2AF2
chr25545667355456741-intron-Distal3.843516.02668HepG2SUGP2
chr25545776255457858-intron-Distal3.674444.23155HepG2MATR3
chr25545773655457824-intron-Distal3.416594.59863HepG2PTBP1
chr25541701055417118-intron-Distal3.115086.35394HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLHC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLHC1 is not available on ENCORE database.

  • 35 RBPs can affect the levels of CLHC1.  








The Knockdown/knockout RNA-Seq assay for CLHC1 is not available on ENCORE database.





35 RBPs can affect the gene expression of CLHC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLHC1ENSG00000162994.11225.29780144.334000.642302.439501.53040HepG2CCAR1
CLHC1ENSG00000162994.11128.45230190.42670-0.568002.313601.71680HepG2CELF1
CLHC1ENSG00000162994.11197.69960100.666600.973605.052504.16460HepG2DDX21
CLHC1ENSG00000162994.11156.17780104.676000.577202.128901.52250HepG2DKC1
CLHC1ENSG00000162994.11152.2783090.043500.757902.719901.63740HepG2ESF1
CLHC1ENSG00000162994.11319.85650212.622000.589003.867603.17710HepG2ETF1
CLHC1ENSG00000162994.1180.9619045.319300.837002.193501.48620HepG2FUBP3
CLHC1ENSG00000162994.11148.2093090.136400.717402.916502.29700HepG2PCBP1
CLHC1ENSG00000162994.11131.19010193.79190-0.562802.100301.57090HepG2PUF60
CLHC1ENSG00000162994.11172.0791099.336700.792603.356002.67730HepG2QKI
CLHC1ENSG00000162994.11163.83190102.071100.682502.558602.03540HepG2NELFE
CLHC1ENSG00000162994.11163.4771095.058600.782103.313702.64750HepG2RECQL
CLHC1ENSG00000162994.1166.46910133.66460-1.007903.862003.05930HepG2SF3A3
CLHC1ENSG00000162994.11161.7052095.492800.759803.129202.50570HepG2SF3B4
CLHC1ENSG00000162994.11128.10620191.35560-0.578902.385601.79900HepG2SRSF5
CLHC1ENSG00000162994.11148.8863081.084400.876604.152603.50180HepG2SRSF9
CLHC1ENSG00000162994.11170.0960089.578600.925004.634103.93780HepG2TAF15
CLHC1ENSG00000162994.11143.3753093.433400.617701.931101.31760HepG2XRN2
CLHC1ENSG00000162994.1145.11290109.80350-1.283305.039804.31260K562AGGF1
CLHC1ENSG00000162994.1166.67140120.64660-0.855603.208602.13170K562AKAP8
CLHC1ENSG00000162994.1150.12140114.25280-1.188704.711003.85090K562AKAP8L
CLHC1ENSG00000162994.1166.00910119.87370-0.860803.378902.35990K562ATP5C1
CLHC1ENSG00000162994.1182.89810131.22980-0.662702.401701.31730K562CCDC124
CLHC1ENSG00000162994.1180.44040142.40400-0.824003.631002.89730K562DDX47
CLHC1ENSG00000162994.1176.33290122.96090-0.687802.449301.63150K562DKC1
CLHC1ENSG00000162994.1147.2042091.47240-0.954403.059302.22310K562EIF3G
CLHC1ENSG00000162994.1133.4046081.32790-1.283703.929502.90800K562FIP1L1
CLHC1ENSG00000162994.11129.0846049.280201.389106.030605.18320K562HNRNPC
CLHC1ENSG00000162994.1161.93310121.26010-0.969303.487602.54990K562KIF1C
CLHC1ENSG00000162994.1158.76310116.06820-0.982003.203002.02200K562MAK16
CLHC1ENSG00000162994.1180.86430135.84070-0.748302.675601.78570K562MBNL1
CLHC1ENSG00000162994.1144.3424095.21360-1.102502.927402.01640K562NAA15
CLHC1ENSG00000162994.1134.71090113.32650-1.707006.745705.94090K562PUS1
CLHC1ENSG00000162994.1145.51110110.40380-1.278505.079504.29810K562RBM15
CLHC1ENSG00000162994.1140.0899096.78420-1.271502.917301.32980K562RBM39
CLHC1ENSG00000162994.1132.1589071.93580-1.161502.771301.91560K562SF3B4
CLHC1ENSG00000162994.1136.1910082.61950-1.190902.506501.35950K562SNRNP200
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLHC1 is not available on ENCORE database.





1 RBPs can affect the splicing of CLHC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLHC1ENSG00000162994.11chr2-5545516755455340554493705544962955459371554594900.388000.007490.06457includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLHC1 is not avaliable on ENCORE database.