C9orf172

General Information

Gene Name       : C9orf172
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C9orf172)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C9orf172 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on C9orf172 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for C9orf172 is not avaliable on ENCORE database.






NO known proteins are bound to C9orf172 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for C9orf172 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C9orf172 is not available on ENCORE database.

  • 56 RBPs can affect the levels of C9orf172.  








The Knockdown/knockout RNA-Seq assay for C9orf172 is not available on ENCORE database.





56 RBPs can affect the gene expression of C9orf172 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C9orf172ENSG00000232434.126.4548078.92900-1.577004.237703.08990HepG2ABCF1
C9orf172ENSG00000232434.113.8461056.86350-2.038004.884001.74860HepG2AGGF1
C9orf172ENSG00000232434.1136.1943029.346702.214302.823702.13160HepG2AUH
C9orf172ENSG00000232434.1108.5779031.961301.764204.087103.37580HepG2BOP1
C9orf172ENSG00000232434.1126.1184044.625101.498804.066302.87160HepG2CCAR1
C9orf172ENSG00000232434.1104.4451029.334001.832004.423203.57100HepG2CPSF6
C9orf172ENSG00000232434.156.039507.932702.820505.946705.06290HepG2DDX3X
C9orf172ENSG00000232434.188.9458033.313601.416702.217301.34530HepG2DDX59
C9orf172ENSG00000232434.137.457006.828402.455502.223601.66400HepG2DDX6
C9orf172ENSG00000232434.114.4172053.66320-1.896103.514102.76480HepG2DKC1
C9orf172ENSG00000232434.118.386301.396803.718302.088501.46860HepG2DNAJC21
C9orf172ENSG00000232434.131.603801.383504.513608.453507.38940HepG2DNAJC2
C9orf172ENSG00000232434.143.951606.550302.746205.321704.51600HepG2EIF2S1
C9orf172ENSG00000232434.122.466204.144102.438503.162602.29430HepG2EIF4G2
C9orf172ENSG00000232434.129.1159068.33970-1.230903.340802.14580HepG2ESF1
C9orf172ENSG00000232434.132.624707.180202.183803.746502.36780HepG2FAM120A
C9orf172ENSG00000232434.150.690206.777202.902807.353606.29240HepG2G3BP1
C9orf172ENSG00000232434.131.7927012.283701.371901.987701.37270HepG2HNRNPF
C9orf172ENSG00000232434.118.632603.992102.222502.535001.88760HepG2HNRNPL
C9orf172ENSG00000232434.119.523801.557903.647504.122303.39390HepG2HNRNPU
C9orf172ENSG00000232434.1229.1339047.221002.2786017.5213015.45030HepG2LARP4
C9orf172ENSG00000232434.129.713607.320002.021102.776202.12060HepG2MAGOH
C9orf172ENSG00000232434.123.1433054.12850-1.225802.961901.70490HepG2NAA15
C9orf172ENSG00000232434.168.679307.528303.189402.890502.24390HepG2NCBP2
C9orf172ENSG00000232434.160.946704.771803.674808.400506.45500HepG2NONO
C9orf172ENSG00000232434.123.292703.196102.865402.797301.90440HepG2PABPC1
C9orf172ENSG00000232434.1104.9859053.331800.977003.525501.56700HepG2PES1
C9orf172ENSG00000232434.119.191801.389603.787704.397003.48730HepG2PPIL4
C9orf172ENSG00000232434.134.782204.149903.067106.042905.20640HepG2PUF60
C9orf172ENSG00000232434.142.1073010.836401.958103.564302.86800HepG2QKI
C9orf172ENSG00000232434.19.6660028.16530-1.542901.829501.38540HepG2RBM22
C9orf172ENSG00000232434.117.649901.387603.668903.820303.08420HepG2SAFB2
C9orf172ENSG00000232434.150.9765095.60560-0.907302.724002.05530HepG2SF3A3
C9orf172ENSG00000232434.135.0030010.416301.748502.612802.03500HepG2SF3B4
C9orf172ENSG00000232434.131.545403.980602.986305.753504.80320HepG2SLBP
C9orf172ENSG00000232434.148.8009014.615401.739302.668301.38920HepG2SNRNP200
C9orf172ENSG00000232434.10.9155010.86980-3.569602.169301.73670HepG2SRSF1
C9orf172ENSG00000232434.143.150704.098303.396208.689107.66110HepG2SRSF5
C9orf172ENSG00000232434.13.2579027.61480-3.083404.863704.22080HepG2SSB
C9orf172ENSG00000232434.116.977403.062302.470802.676001.59580HepG2STIP1
C9orf172ENSG00000232434.11.019409.76300-3.259701.917401.43580HepG2TAF15
C9orf172ENSG00000232434.142.939201.527304.8132011.1486010.12840HepG2TRIM56
C9orf172ENSG00000232434.161.6022016.961601.860602.913201.89760HepG2U2AF2
C9orf172ENSG00000232434.142.372404.293503.302805.782704.54350HepG2UBE2L3
C9orf172ENSG00000232434.144.3204081.85880-0.885202.177801.63310HepG2UTP3
C9orf172ENSG00000232434.134.087203.150603.435504.643403.20970HepG2XPO5
C9orf172ENSG00000232434.1180.8883093.249900.955803.281502.70090HepG2ZNF622
C9orf172ENSG00000232434.129.333609.234501.667402.140601.61250K562AQR
C9orf172ENSG00000232434.159.728101.479505.3351015.6860012.63850K562CCAR1
C9orf172ENSG00000232434.140.1858010.423401.946803.604101.92090K562CKAP4
C9orf172ENSG00000232434.123.305504.802002.278902.652701.88380K562CPSF6
C9orf172ENSG00000232434.119.491101.558103.644803.990201.72230K562DDX1
C9orf172ENSG00000232434.118.476501.655903.479903.523301.99870K562DHX30
C9orf172ENSG00000232434.142.2209010.610601.992303.070302.17440K562FIP1L1
C9orf172ENSG00000232434.119.333801.920603.331403.158702.52670K562HNRNPC
C9orf172ENSG00000232434.137.730606.234902.597205.440504.17420K562HNRNPU
C9orf172ENSG00000232434.119.938101.482703.749204.277401.66960K562PARN
C9orf172ENSG00000232434.110.270800.477404.427202.677401.85130K562RBM22
C9orf172ENSG00000232434.18.491900.495604.098802.013301.40350K562TARDBP
C9orf172ENSG00000232434.110.319000.478304.431102.493701.72250K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C9orf172 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C9orf172 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C9orf172 is not avaliable on ENCORE database.