APOO

General Information

Gene Name       : APOO
Gene ID             : ENSG00000184831.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APOO)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APOOENSG00000184831.1322.9720.4421.70ENCSR000AEF
HepG2APOOENSG00000184831.139.2017.9513.57ENCSR985KAT
K562APOOENSG00000184831.1345.4648.4646.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for APOO is not avaliable on ENCORE database.



Proteins bound to RNA
  • APOO RNA is bound by 4 proteins.  







eCLIP assay for APOO is not avaliable on ENCORE database.





4 proteins are bound to APOO RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX2385151823851611-3'-UTR,intron-Distal4.758466.91022K562IGF2BP1
chrX2392591123926030-5'-UTR,intron-Distal,intron-Proximal4.150978.67207K562DDX3X
chrX2392582823925900-5'-UTR,intron-Distal3.844363.39858K562IGF2BP2
chrX2388082223880968-intron-Distal4.882336.13169K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for APOO is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for APOO is not available on ENCORE database.

  • 38 RBPs can affect the levels of APOO.  








The Knockdown/knockout RNA-Seq assay for APOO is not available on ENCORE database.





38 RBPs can affect the gene expression of APOO :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APOOENSG00000184831.9145.1384087.658600.727403.108402.46950HepG2ACO1
APOOENSG00000184831.9375.11280112.545001.7367015.3490014.20000HepG2AKAP1
APOOENSG00000184831.946.4468092.29230-0.990602.827702.13390HepG2CPSF6
APOOENSG00000184831.9165.93140107.795700.622202.007601.46610HepG2DDX3X
APOOENSG00000184831.9154.5404092.631400.738302.421601.84000HepG2DDX6
APOOENSG00000184831.951.8109098.37270-0.925002.951801.94450HepG2DHX30
APOOENSG00000184831.941.6120092.45970-1.151802.296601.37910HepG2FTO
APOOENSG00000184831.951.89470104.60840-1.011303.026602.36090HepG2GPKOW
APOOENSG00000184831.955.76310102.97280-0.884902.551301.92830HepG2HNRNPA1
APOOENSG00000184831.9100.75250163.66400-0.699902.103801.47220HepG2HNRNPF
APOOENSG00000184831.984.65780130.86350-0.628302.327401.70170HepG2HNRNPL
APOOENSG00000184831.990.60320161.16590-0.830903.389402.59430HepG2IGF2BP1
APOOENSG00000184831.976.26980116.22110-0.607702.092001.44460HepG2ILF2
APOOENSG00000184831.942.0889088.52790-1.072702.877002.11360HepG2NSUN2
APOOENSG00000184831.949.1408091.00100-0.889002.460101.77550HepG2PABPC4
APOOENSG00000184831.9154.5170081.759400.918202.576001.89490HepG2RAVER1
APOOENSG00000184831.9106.95530176.25220-0.720602.682802.00750HepG2RPLP0
APOOENSG00000184831.955.0329098.80580-0.844302.388901.73140HepG2SF3B1
APOOENSG00000184831.9172.3117095.928200.844903.671803.14620HepG2SRSF1
APOOENSG00000184831.994.74620160.78200-0.763003.124502.39100HepG2SRSF7
APOOENSG00000184831.9101.02200152.25810-0.591802.301901.82460HepG2SSB
APOOENSG00000184831.951.8429097.33630-0.908802.612801.90520HepG2TARDBP
APOOENSG00000184831.9131.8516083.540600.658302.358001.79530HepG2UTP3
APOOENSG00000184831.9382.77260779.31870-1.0257012.2851011.17580K562AQR
APOOENSG00000184831.9361.72690475.52260-0.394602.547201.30450K562BCCIP
APOOENSG00000184831.9194.78430457.56330-1.2321013.6403012.40060K562HNRNPC
APOOENSG00000184831.9440.03450599.67340-0.446603.260602.10200K562HNRNPL
APOOENSG00000184831.9826.78680643.212900.362102.455301.70170K562HSPD1
APOOENSG00000184831.9458.04800579.13760-0.338402.718501.97780K562NSUN2
APOOENSG00000184831.9311.37170424.87260-0.448402.458901.54000K562PCBP2
APOOENSG00000184831.9230.80060476.25090-1.045109.455207.92710K562PCBP3
APOOENSG00000184831.9196.44250365.30900-0.895007.620706.31580K562POLR2G
APOOENSG00000184831.9322.82640444.90920-0.462802.841801.98930K562RBM22
APOOENSG00000184831.9363.16790571.46870-0.654007.036105.77960K562SF3A3
APOOENSG00000184831.9260.60650378.39780-0.538003.763802.76210K562SF3B4
APOOENSG00000184831.9463.11880585.48270-0.338202.597201.68570K562SRPK2
APOOENSG00000184831.9296.72990415.81970-0.486803.273301.62070K562SRSF9
APOOENSG00000184831.9323.91540460.27770-0.506903.174502.41650K562TARDBP
APOOENSG00000184831.9286.33090419.18540-0.549903.245702.20270K562TRIM56
APOOENSG00000184831.9445.95190614.07230-0.461504.453403.56410K562UPF1
APOOENSG00000184831.9609.75420877.94460-0.525904.947703.73990K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for APOO is not available on ENCORE database.





13 RBPs can affect the splicing of APOO :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAPOOENSG00000184831.9chrX-238744182387449923858429238584942387675823876850-0.225000.000000.00003excludedK562SF3B4
SEAPOOENSG00000184831.9chrX-238637762386391323858429238584942387441823874499-0.122000.000180.01630excludedHepG2AKAP1
SEAPOOENSG00000184831.9chrX-238925192389257423876758238768502389703123897151-0.087000.004980.04636excludedK562AQR
SEAPOOENSG00000184831.9chrX-2387441823874499238584292385849423876758238768500.118000.000100.02871includedK562HNRNPA1
SEAPOOENSG00000184831.9chrX-238744182387449923858429238584942387675823876850-0.097000.000340.00688excludedK562PUS1
SEAPOOENSG00000184831.9chrX-238867092388680523876758238768502389703123897151-0.080000.003670.04902excludedK562PUS1
SEAPOOENSG00000184831.9chrX-238744182387449923858429238584942387675823876850-0.150000.000090.00253excludedK562U2AF2
SEAPOOENSG00000184831.9chrX-238989612389906923897031238971512392581023926020-0.103000.000850.03325excludedK562HNRNPU
SEAPOOENSG00000184831.9chrX-238867092388680523876758238768502389703123897151-0.094000.002010.04630excludedK562RBM15
SEAPOOENSG00000184831.9chrX-238744182387449923858429238584942387675823876850-0.073000.004050.07927excludedK562AGGF1
SEAPOOENSG00000184831.9chrX-238744182387449923858429238584942387675823876850-0.165000.000740.03188excludedK562SF3B1
SEAPOOENSG00000184831.9chrX-238744182387449923858429238584942387675823876850-0.085000.007550.09501excludedK562HNRNPC
A3SSAPOOENSG00000184831.9chrX-2389703123897194238970312389715123898961238990870.068000.000000.00001longerK562AQR
A3SSAPOOENSG00000184831.9chrX-2389251923892593238925192389257423897031238971940.057000.001780.01162longerK562AQR
A3SSAPOOENSG00000184831.9chrX-2385842923858651238584292385849423874418238744990.051000.000110.00097longerK562AQR
A3SSAPOOENSG00000184831.9chrX-2389896123899098238989612389906923925810239260570.116000.000000.00000longerK562AQR
MXEAPOOENSG00000184831.9chrX-2387675823876850238867092388680523858429238584942389251923892574-0.164000.000370.009492includedK562PUS1
MXEAPOOENSG00000184831.9chrX-23876758238768502389251923892574238584292385849423897031238971510.130000.000150.037171includedK562HNRNPA1
MXEAPOOENSG00000184831.9chrX-23858429238584942387441823874499238514832385162723876758238768500.176000.000800.027791includedK562EFTUD2
MXEAPOOENSG00000184831.9chrX-2388670923886805238925192389257423876758238768502389703123897151-0.330000.000490.021272includedHepG2SF3B4
MXEAPOOENSG00000184831.9chrX-23858429238584942387441823874499238514692385172923876758238768500.112000.001360.090421includedK562PUM1
MXEAPOOENSG00000184831.9chrX-2387675823876850238867092388680523858429238584942389251923892574-0.287000.000000.000242includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for APOO is not avaliable on ENCORE database.