AC009784.3

General Information

Gene Name : AC009784.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AC009784.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AC009784.3 is not avaliable on ENCORE database.

Proteins bound to RNA

AC009784.3 RNA is bound by 10 proteins.

eCLIP assay for AC009784.3 is not avaliable on ENCORE database.

10 proteins are bound to AC009784.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	135798742	135798824	+	intron-Distal	3.20850	3.14999	K562	EXOSC5
chr7	135793434	135793484	+	intron-Distal	5.08841	7.71312	K562	EXOSC5
chr7	135794524	135794581	+	intron-Distal	4.77505	5.12432	K562	EXOSC5
chr7	135790416	135790462	+	intron-Distal	4.03067	6.10949	K562	EXOSC5
chr7	135793584	135793613	+	intron-Distal	5.31274	7.38793	K562	EXOSC5
chr7	135872062	135872234	+	intron-Distal	3.86957	7.46973	K562	KHSRP
chr7	135927798	135927889	+	intron-Distal	4.26970	4.72754	K562	YBX3
chr7	135792943	135793003	+	intron-Distal	5.36947	10.34146	K562	EXOSC5
chr7	135840004	135840102	+	intron-Distal	6.23356	6.85401	K562	QKI
chr7	135845582	135845702	+	intron-Distal	3.71546	5.68494	K562	MATR3
chr7	135833771	135833876	+	intron-Distal	4.45082	4.30178	K562	PTBP1
chr7	135790899	135790942	+	intron-Distal	4.93932	13.19522	K562	EXOSC5
chr7	135791393	135791449	+	intron-Distal	5.72941	12.32698	K562	EXOSC5
chr7	135884254	135884344	+	intron-Distal	5.07484	7.80309	K562	HNRNPM
chr7	135789829	135789889	+	intron-Distal	5.63519	12.32698	K562	EXOSC5
chr7	135790285	135790356	+	intron-Distal	4.77608	11.58120	K562	EXOSC5
chr7	135883632	135883669	+	intron-Distal	5.12493	3.54147	K562	HNRNPM
chr7	135828861	135828899	+	intron-Distal	3.80629	3.06015	K562	MATR3
chr7	135883800	135883876	+	intron-Distal	5.28329	19.07792	K562	EXOSC5
chr7	135797722	135797790	+	intron-Distal	4.67038	11.90186	K562	EXOSC5
chr7	135882650	135882698	+	intron-Distal	4.88892	6.28496	K562	AGGF1
chr7	135798737	135798791	+	intron-Distal	4.76534	3.79026	K562	HNRNPM
chr7	135797715	135797792	+	intron-Distal	3.62459	6.75305	K562	MATR3
chr7	135929277	135929353	+	intron-Distal	3.14044	5.15194	K562	UPF1
chr7	135804905	135805025	+	intron-Distal	4.19009	6.71800	K562	MATR3
chr7	135791908	135791944	+	intron-Distal	4.52287	4.48623	K562	EXOSC5
chr7	135791603	135791623	+	intron-Distal	3.75259	5.50856	K562	EXOSC5
chr7	135788688	135788775	+	intron-Distal	4.71903	6.08953	K562	EXOSC5
chr7	135795773	135795843	+	intron-Distal	4.24326	7.01333	K562	EXOSC5
chr7	135798302	135798367	+	intron-Distal	5.34675	10.29334	K562	MATR3
chr7	135828220	135828318	+	intron-Distal	5.25798	6.19517	K562	MATR3
chr7	135896317	135896407	+	intron-Distal	4.01706	3.45805	K562	KHSRP
chr7	135960121	135960191	+	intron-Distal	6.60956	13.04119	K562	PTBP1
chr7	135790975	135791074	+	intron-Distal	4.34087	16.03090	K562	EXOSC5
chr7	135807654	135807770	+	intron-Distal	5.43081	14.05565	K562	QKI
chr7	135783344	135783397	+	intron-Distal	3.20850	3.15041	K562	EXOSC5
chr7	135871997	135872062	+	intron-Distal	3.72457	3.76275	K562	PTBP1
chr7	135881182	135881222	+	intron-Distal	3.34855	4.02190	K562	EXOSC5
chr7	135793003	135793076	+	intron-Distal	6.14353	18.32750	K562	EXOSC5
chr7	135883985	135884079	+	intron-Distal	6.01499	16.32087	K562	EXOSC5
chr7	135791726	135791761	+	intron-Distal	5.01201	7.38693	K562	EXOSC5
chr7	135805025	135805163	+	intron-Distal	4.98171	7.94214	K562	MATR3
chr7	135835092	135835164	+	intron-Distal	4.90204	3.91475	K562	PTBP1
chr7	135795492	135795530	+	intron-Distal	4.18775	6.41110	K562	EXOSC5
chr7	135797051	135797145	+	intron-Distal	4.17754	6.10949	K562	EXOSC5
chr7	135881524	135881557	+	intron-Distal	4.43102	5.12361	K562	EXOSC5
chr7	135796245	135796282	+	intron-Distal	4.16477	3.59917	K562	EXOSC5
chr7	135947100	135947196	+	intron-Distal	6.31373	9.44534	K562	PTBP1
chr7	135896822	135897009	+	intron-Distal	3.25522	4.96160	K562	KHSRP
chr7	135881047	135881094	+	intron-Distal	4.58121	5.44508	K562	EXOSC5
chr7	135793317	135793378	+	intron-Distal	3.97049	8.78073	K562	EXOSC5
chr7	135825525	135825658	+	intron-Distal	3.57840	3.02234	K562	KHSRP
chr7	135791481	135791549	+	intron-Distal	5.67038	12.98926	K562	EXOSC5
chr7	135791629	135791685	+	intron-Distal	6.16778	18.66479	K562	EXOSC5
chr7	135790636	135790683	+	intron-Distal	3.76359	8.47592	K562	EXOSC5
chr7	135845583	135845697	+	intron-Distal	6.33196	8.42544	K562	PTBP1
chr7	135879302	135879461	+	intron-Distal	5.25297	20.29032	K562	QKI
chr7	135887362	135887412	+	intron-Distal	3.76251	4.52210	K562	KHSRP
chr7	135887412	135887481	+	intron-Distal	4.34607	5.62025	K562	KHSRP
chr7	135827829	135827925	+	intron-Distal	4.95962	6.77551	K562	MATR3
chr7	135788503	135788632	+	intron-Distal	5.27918	9.02315	K562	EXOSC5
chr7	135884430	135884465	+	intron-Distal	4.38762	6.31832	K562	HNRNPM
chr7	135793158	135793210	+	intron-Distal	3.93693	8.78073	K562	EXOSC5
chr7	135884486	135884537	+	intron-Distal	3.88347	8.78192	K562	EXOSC5
chr7	135828063	135828125	+	intron-Distal	4.20955	3.47525	K562	MATR3
chr7	135884176	135884232	+	intron-Distal	5.06476	7.71416	K562	EXOSC5
chr7	135864749	135864832	+	intron-Distal	4.31361	3.60944	K562	TARDBP
chr7	135793102	135793158	+	intron-Distal	5.47002	11.00067	K562	EXOSC5
chr7	135793115	135793344	+	intron-Distal	3.75276	8.62000	K562	MATR3
chr7	135793225	135793276	+	intron-Distal	4.06476	4.91037	K562	EXOSC5
chr7	135884404	135884430	+	intron-Distal	4.37597	6.55884	K562	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for AC009784.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AC009784.3 is not available on ENCORE database.
33 RBPs can affect the levels of AC009784.3.

The Knockdown/knockout RNA-Seq assay for AC009784.3 is not available on ENCORE database.

33 RBPs can affect the gene expression of AC009784.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AC009784.3	ENSG00000232053.2	93.51550	42.29950	1.14450	2.96470	2.06040	K562	BOP1
AC009784.3	ENSG00000232053.2	120.81550	44.97740	1.42540	6.29210	5.11010	K562	CPSF6
AC009784.3	ENSG00000232053.2	31.63330	99.04350	-1.64660	7.24290	6.25690	K562	DDX47
AC009784.3	ENSG00000232053.2	174.51300	118.10250	0.56320	2.33030	1.53590	K562	DKC1
AC009784.3	ENSG00000232053.2	8.46400	32.55440	-1.94340	2.44810	1.50680	K562	EIF3A
AC009784.3	ENSG00000232053.2	37.20250	96.95110	-1.38190	5.36520	4.27200	K562	EIF3G
AC009784.3	ENSG00000232053.2	62.54360	161.02720	-1.36440	8.17710	7.20590	K562	FXR1
AC009784.3	ENSG00000232053.2	227.82570	141.90570	0.68290	3.54170	1.88480	K562	G3BP1
AC009784.3	ENSG00000232053.2	132.11480	66.57510	0.98860	3.51380	1.87820	K562	GEMIN5
AC009784.3	ENSG00000232053.2	146.73500	83.52620	0.81280	2.77450	2.01760	K562	GRSF1
AC009784.3	ENSG00000232053.2	159.96120	89.51410	0.83740	3.83890	2.56680	K562	HNRNPL
AC009784.3	ENSG00000232053.2	178.18020	122.95030	0.53520	2.22330	1.42340	K562	HNRNPU
AC009784.3	ENSG00000232053.2	109.07940	63.33300	0.78420	2.25650	1.53390	K562	HSPD1
AC009784.3	ENSG00000232053.2	224.09030	150.97240	0.56970	2.78720	1.59210	K562	IGF2BP3
AC009784.3	ENSG00000232053.2	117.58640	36.66620	1.68110	6.40440	4.91780	K562	KRR1
AC009784.3	ENSG00000232053.2	66.63390	155.67470	-1.22420	7.03060	5.46920	K562	MATR3
AC009784.3	ENSG00000232053.2	107.93180	48.70610	1.14780	4.40680	3.40680	K562	MTPAP
AC009784.3	ENSG00000232053.2	110.58020	54.13160	1.03050	3.78940	2.93130	K562	NSUN2
AC009784.3	ENSG00000232053.2	229.21950	144.00980	0.67050	3.00480	1.50650	K562	PNPT1
AC009784.3	ENSG00000232053.2	80.31180	151.55570	-0.91620	4.50550	3.67820	K562	PTBP1
AC009784.3	ENSG00000232053.2	240.35260	159.35200	0.59280	2.56330	1.63750	K562	PUM2
AC009784.3	ENSG00000232053.2	66.08770	106.04900	-0.68230	1.94380	1.43130	K562	RBM15
AC009784.3	ENSG00000232053.2	28.09790	65.80620	-1.22780	2.77370	1.95630	K562	RPS19
AC009784.3	ENSG00000232053.2	41.01570	115.07220	-1.48830	5.33060	3.87780	K562	RPS3
AC009784.3	ENSG00000232053.2	104.54960	53.39210	0.96940	3.42440	2.52260	K562	SF3A3
AC009784.3	ENSG00000232053.2	78.48730	148.57540	-0.92070	3.97910	3.13700	K562	SRSF1
AC009784.3	ENSG00000232053.2	118.37900	62.53830	0.92050	2.88200	1.84450	K562	SUPV3L1
AC009784.3	ENSG00000232053.2	16.61350	39.11850	-1.23550	2.10600	1.38870	K562	SYNCRIP
AC009784.3	ENSG00000232053.2	205.05040	143.55330	0.51430	2.24530	1.52250	K562	U2AF2
AC009784.3	ENSG00000232053.2	279.51700	172.43860	0.69680	3.48380	1.89270	K562	UBE2L3
AC009784.3	ENSG00000232053.2	172.00730	57.39570	1.58340	10.52560	9.23850	K562	UPF1
AC009784.3	ENSG00000232053.2	94.04370	49.11360	0.93710	2.91940	2.02060	K562	WDR3
AC009784.3	ENSG00000232053.2	163.42370	110.32430	0.56680	2.18080	1.42550	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AC009784.3 is not available on ENCORE database.

16 RBPs can affect the splicing of AC009784.3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AC009784.3	ENSG00000232053.2	chr7	+	135885952	135886119			135861999	135862161	135926897	135927119	0.08700	0.00543	0.08087	included	K562	SRSF1
SE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161			135777672	135777784	135926897	135927106	-0.27000	0.00183	0.03403	excluded	K562	SRSF1
SE	AC009784.3	ENSG00000232053.2	chr7	+	135861999	135862161			135777704	135777784	136013729	136013845	-0.33800	0.00001	0.00122	excluded	K562	PRPF8
SE	AC009784.3	ENSG00000232053.2	chr7	+	136090017	136090064			136013729	136013845	136121799	136121911	-0.42600	0.00028	0.01392	excluded	K562	PRPF8
SE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927119			135861999	135862161	136013729	136013845	-0.30400	0.00205	0.05458	excluded	K562	AKAP8L
SE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936			135777672	135777784	135861999	135862161	0.17400	0.00010	0.00655	included	K562	FXR1
SE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927119			135861999	135862161	136013729	136013845	0.36600	0.00001	0.00366	included	K562	DROSHA
SE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936			135777672	135777784	135861999	135862161	0.14200	0.00060	0.07564	included	K562	DROSHA
SE	AC009784.3	ENSG00000232053.2	chr7	+	135861999	135862161			135777704	135777784	136013729	136013845	-0.28100	0.00011	0.00888	excluded	K562	EFTUD2
SE	AC009784.3	ENSG00000232053.2	chr7	+	136090017	136090064			136013729	136013845	136121799	136121911	-0.37800	0.00070	0.03951	excluded	K562	EFTUD2
SE	AC009784.3	ENSG00000232053.2	chr7	+	135958657	135958832			135861999	135862161	136013729	136013845	0.15900	0.00110	0.06829	included	K562	HNRNPL
SE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927119			135861999	135862161	136013729	136013845	0.21800	0.00012	0.03384	included	K562	FXR2
SE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927119			135861999	135862161	136013729	136013845	0.27700	0.00157	0.08779	included	K562	HNRNPUL1
SE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936			135777672	135777784	135861999	135862161	-0.05400	0.00066	0.01412	excluded	K562	U2AF2
SE	AC009784.3	ENSG00000232053.2	chr7	+	136090017	136090064			136013729	136013845	136121799	136121911	-0.38500	0.00096	0.03657	excluded	K562	TARDBP
SE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936			135777672	135777784	135861999	135862161	-0.12700	0.00001	0.00109	excluded	K562	HNRNPU
SE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927119			135862006	135862161	136013729	136013845	-0.26200	0.00039	0.02234	excluded	K562	HNRNPK
SE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936			135777672	135777784	135861999	135862161	-0.06300	0.00268	0.09432	excluded	K562	HNRNPK
SE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161			135777672	135777784	135926897	135927106	0.28100	0.00210	0.06988	included	K562	PTBP1
SE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936			135777672	135777784	135861999	135862161	0.32400	0.00001	0.00051	included	K562	HNRNPC
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161	135926897	135927119	135777672	135777784	136013729	136013845	-0.29600	0.00018	0.02403	2included	K562	HNRNPL
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161	135926897	135927106	135777672	135777784	136013729	136013845	0.52800	0.00338	0.08196	1included	K562	PTBP1
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161	135926897	135927119	135777672	135777784	136013729	136013845	0.45100	0.00144	0.04480	1included	K562	PTBP1
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135801818	135801936	135859371	135859467	135777672	135777784	135861999	135862161	0.12700	0.01172	0.09744	1included	K562	DROSHA
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161	135926897	135927106	135777672	135777784	136013729	136013845	0.28600	0.00328	0.05073	1included	K562	PUS1
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135862006	135862161	135926897	135927119	135777672	135777784	136013729	136013845	0.23500	0.00556	0.07503	1included	K562	PUS1
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927106	135951713	135951837	135862006	135862161	136013729	136013845	-0.26800	0.00001	0.00055	2included	K562	SRSF1
MXE	AC009784.3	ENSG00000232053.2	chr7	+	135926897	135927119	135951713	135951837	135862006	135862161	136013729	136013845	-0.21800	0.00001	0.00038	2included	K562	SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AC009784.3

General Information

Functions

Localization

Domains (AlphaFold: AC009784.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AC009784.3 is not avaliable on ENCORE database.

10 proteins are bound to AC009784.3 RNA:

eCLIP assay for AC009784.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AC009784.3 is not available on ENCORE database.

33 RBPs can affect the gene expression of AC009784.3 :

The Knockdown/knockout RNA-Seq assay for AC009784.3 is not available on ENCORE database.

16 RBPs can affect the splicing of AC009784.3 :

The Knockdown/knockout RNA-Seq assay for AC009784.3 is not avaliable on ENCORE database.