VEGFA

General Information

Gene Name : VEGFA
Gene ID : ENSG00000112715.21
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VEGFA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VEGFA	ENSG00000112715.21	11.43	15.24	13.34	ENCSR000AEF
HepG2	VEGFA	ENSG00000112715.21	99.85	82.75	91.30	ENCSR985KAT
K562	VEGFA	ENSG00000112715.21	96.45	115.65	106.05	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VEGFA is not avaliable on ENCORE database.

Proteins bound to RNA

VEGFA RNA is bound by 77 proteins.

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eCLIP assay for VEGFA is not avaliable on ENCORE database.

77 proteins are bound to VEGFA RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	43746654	43746660	+	CDS,intron-Distal,intron-Proximal	4.32320	400.00000	K562	AQR
chr6	43745894	43745982	+	intron-Distal	3.59820	400.00000	K562	GPKOW
chr6	43746309	43746313	+	intron-Distal,intron-Proximal	5.93270	400.00000	K562	AQR
chr6	43745872	43745933	+	intron-Distal	4.07252	400.00000	K562	SF3B1
chr6	43746275	43746285	+	intron-Distal,intron-Proximal	5.83628	400.00000	K562	AQR
chr6	43746285	43746309	+	intron-Distal,intron-Proximal	5.88413	400.00000	K562	AQR
chr6	43745927	43745981	+	intron-Distal	5.09650	400.00000	K562	EFTUD2
chr6	43745939	43745983	+	intron-Distal	4.87982	400.00000	K562	SF3B4
chr6	43745933	43745968	+	intron-Distal	4.90935	400.00000	K562	SF3B1
chr6	43745926	43745967	+	intron-Distal	3.58033	400.00000	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 427 entries

eCLIP assay for VEGFA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VEGFA is not available on ENCORE database.
168 RBPs can affect the levels of VEGFA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VEGFA is not available on ENCORE database.

168 RBPs can affect the gene expression of VEGFA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VEGFA	ENSG00000112715.16	3506.73900	8335.98680	-1.24920	126.27840	123.67200	HepG2	PUM1
VEGFA	ENSG00000112715.16	1533.73070	5684.74380	-1.89010	92.15640	89.55460	HepG2	RPS19
VEGFA	ENSG00000112715.16	2796.38050	8471.76220	-1.59910	82.66470	79.40560	K562	SYNCRIP
VEGFA	ENSG00000112715.16	2487.37410	7525.80410	-1.59720	68.28150	64.75600	K562	SAFB
VEGFA	ENSG00000112715.16	5372.59440	15854.31760	-1.56120	61.38720	57.43530	K562	PUF60
VEGFA	ENSG00000112715.16	2727.64690	5414.27310	-0.98910	52.40270	50.04410	HepG2	HNRNPU
VEGFA	ENSG00000112715.16	2355.29820	7196.80760	-1.61140	52.24430	49.49810	HepG2	EEF2
VEGFA	ENSG00000112715.16	3254.05150	5622.87070	-0.78910	49.07270	47.00360	HepG2	SMN1
VEGFA	ENSG00000112715.16	1944.61260	9996.33180	-2.36190	46.72470	45.29710	HepG2	SRSF1
VEGFA	ENSG00000112715.16	9768.21140	4829.10030	1.01620	45.89210	43.06480	HepG2	PPIL4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 217 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VEGFA is not available on ENCORE database.

56 RBPs can affect the splicing of VEGFA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	VEGFA	ENSG00000112715.16	chr6	+	43749692	43749824	43746625	43746655	43752277	43752346	-0.19000	0.00000	excluded	K562	SF3B4
SE	VEGFA	ENSG00000112715.16	chr6	+	43742077	43742129	43738983	43739049	43745205	43745402	-0.05600	0.00007	excluded	K562	SF3B4
SE	VEGFA	ENSG00000112715.16	chr6	+	43749692	43749824	43746625	43746655	43752277	43752346	-0.28200	0.00000	excluded	HepG2	U2AF1
SE	VEGFA	ENSG00000112715.16	chr6	+	43748468	43748540	43746625	43746655	43749692	43749824	-0.12900	0.00004	excluded	K562	AKAP8L
SE	VEGFA	ENSG00000112715.16	chr6	+	43749692	43749824	43746625	43746655	43752277	43752346	0.21400	0.00000	included	HepG2	HNRNPM
SE	VEGFA	ENSG00000112715.16	chr6	+	43749692	43749824	43746625	43746655	43752277	43752346	-0.20600	0.00000	excluded	HepG2	U2AF2
SE	VEGFA	ENSG00000112715.16	chr6	+	43748468	43748540	43746625	43746655	43749692	43749824	-0.16400	0.00000	excluded	K562	AQR
SE	VEGFA	ENSG00000112715.16	chr6	+	43749692	43749824	43746625	43746655	43752277	43752346	-0.15600	0.00000	excluded	K562	PUS1
SE	VEGFA	ENSG00000112715.16	chr6	+	43742077	43742129	43738983	43739049	43745205	43745402	-0.10100	0.00000	excluded	K562	PUS1
SE	VEGFA	ENSG00000112715.16	chr6	+	43748468	43748540	43746625	43746655	43749692	43749824	-0.12200	0.00002	excluded	K562	EFTUD2

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VEGFA

General Information

Functions

Localization

Domains (AlphaFold: VEGFA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VEGFA is not avaliable on ENCORE database.

77 proteins are bound to VEGFA RNA:

eCLIP assay for VEGFA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VEGFA is not available on ENCORE database.

168 RBPs can affect the gene expression of VEGFA :

The Knockdown/knockout RNA-Seq assay for VEGFA is not available on ENCORE database.

56 RBPs can affect the splicing of VEGFA :

The Knockdown/knockout RNA-Seq assay for VEGFA is not avaliable on ENCORE database.