VAPA

General Information

Gene Name : VAPA
Gene ID : ENSG00000101558.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VAPA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VAPA	ENSG00000101558.13	167.36	171.38	169.37	ENCSR000AEF
HepG2	VAPA	ENSG00000101558.13	134.59	193.82	164.20	ENCSR985KAT
K562	VAPA	ENSG00000101558.13	571.03	606.41	588.72	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VAPA is not avaliable on ENCORE database.

Proteins bound to RNA

VAPA RNA is bound by 52 proteins.

CanvasJS.com

eCLIP assay for VAPA is not avaliable on ENCORE database.

52 proteins are bound to VAPA RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	9954364	9954404	+	3'-UTR	5.04902	400.00000	K562	PUM2
chr18	9954669	9954735	+	3'-UTR	3.97977	400.00000	K562	PUM2
chr18	9954601	9954669	+	3'-UTR	3.14527	400.00000	K562	PUM2
chr18	9954406	9954463	+	3'-UTR	4.96894	400.00000	K562	PUM2
chr18	9954557	9954598	+	3'-UTR	3.87295	87.06171	K562	PABPC4
chr18	9954311	9954364	+	3'-UTR	3.87337	81.99602	K562	PUM2
chr18	9914036	9914124	+	5'-UTR	4.84534	60.47621	K562	DDX3X
chr18	9954557	9954593	+	3'-UTR	4.87714	59.28693	K562	ZC3H11A
chr18	9954593	9954611	+	3'-UTR	4.63897	58.49455	K562	ZC3H11A
chr18	9954412	9954493	+	3'-UTR,polyA_signal	4.19422	56.25277	K562	ZC3H11A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 254 entries

eCLIP assay for VAPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VAPA is not available on ENCORE database.
100 RBPs can affect the levels of VAPA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VAPA is not available on ENCORE database.

100 RBPs can affect the gene expression of VAPA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VAPA	ENSG00000101558.9	2345.76580	5769.53940	-1.29840	40.24860	36.82420	K562	EIF4A3
VAPA	ENSG00000101558.9	2317.10700	4706.92490	-1.02250	29.05660	27.20910	K562	HNRNPC
VAPA	ENSG00000101558.9	1244.22170	2173.66000	-0.80490	25.17130	23.49130	HepG2	HNRNPU
VAPA	ENSG00000101558.9	1261.03660	2936.80710	-1.21960	20.94630	19.22550	HepG2	EIF4A3
VAPA	ENSG00000101558.9	2169.92980	3678.46900	-0.76150	17.58840	15.66510	K562	POLR2G
VAPA	ENSG00000101558.9	10155.74020	7222.32280	0.49170	16.22960	14.97470	K562	AGGF1
VAPA	ENSG00000101558.9	1298.08060	2218.16990	-0.77300	14.30970	12.49310	HepG2	EWSR1
VAPA	ENSG00000101558.9	4134.27980	5731.30680	-0.47120	13.85430	12.21300	K562	MTPAP
VAPA	ENSG00000101558.9	2566.14580	1821.42390	0.49440	13.00050	11.72170	HepG2	ZC3H8
VAPA	ENSG00000101558.9	5102.73540	6367.98220	-0.31960	11.03980	9.68640	K562	NSUN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VAPA is not available on ENCORE database.

19 RBPs can affect the splicing of VAPA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.11400	0.00000	included	HepG2	PRPF8
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.16800	0.00000	included	HepG2	DDX59
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.18500	0.00000	included	HepG2	U2AF2
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.05400	0.00928	included	K562	NONO
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	-0.05100	0.00000	excluded	K562	PUS1
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.30600	0.00000	included	HepG2	SFPQ
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.05600	0.00002	included	K562	LARP4
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.11100	0.00000	included	HepG2	LARP4
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.07500	0.00001	included	HepG2	SRSF1
SE	VAPA	ENSG00000101558.9	chr18	+	9944920	9945055	9936982	9937063	9950391	9950565	0.07100	0.00000	included	K562	U2AF2

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VAPA

General Information

Functions

Localization

Domains (AlphaFold: VAPA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VAPA is not avaliable on ENCORE database.

52 proteins are bound to VAPA RNA:

eCLIP assay for VAPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VAPA is not available on ENCORE database.

100 RBPs can affect the gene expression of VAPA :

The Knockdown/knockout RNA-Seq assay for VAPA is not available on ENCORE database.

19 RBPs can affect the splicing of VAPA :

The Knockdown/knockout RNA-Seq assay for VAPA is not avaliable on ENCORE database.