TYMS

General Information

Gene Name : TYMS
Gene ID : ENSG00000176890.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TYMS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TYMS	ENSG00000176890.15	158.09	202.18	180.13	ENCSR000AEF
HepG2	TYMS	ENSG00000176890.15	325.35	319.24	322.30	ENCSR985KAT
K562	TYMS	ENSG00000176890.15	275.39	275.28	275.33	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TYMS is not avaliable on ENCORE database.

Proteins bound to RNA

TYMS RNA is bound by 25 proteins.

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eCLIP assay for TYMS is not avaliable on ENCORE database.

25 proteins are bound to TYMS RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	673415	673460	+	3'-UTR	5.52967	62.27390	K562	PABPC4
chr18	657696	657833	+	5'-UTR,CDS	3.47235	26.67213	K562	DDX3X
chr18	673420	673467	+	3'-UTR	5.92149	25.02829	HepG2	SUB1
chr18	659644	659714	+	CDS,intron-Distal	3.41703	24.26954	K562	DDX3X
chr18	666223	666310	+	intron-Distal	5.86039	24.03221	K562	EXOSC5
chr18	673467	673519	+	3'-UTR	7.33760	23.89948	HepG2	SUB1
chr18	673299	673351	+	3'-UTR	7.10473	21.85814	HepG2	SUB1
chr18	666792	666857	+	intron-Distal	5.56753	21.71575	K562	EXOSC5
chr18	669151	669161	+	CDS,intron-Distal	4.10070	18.25618	K562	YBX3
chr18	662190	662258	+	CDS,intron-Distal	5.68347	18.07637	K562	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 78 entries

eCLIP assay for TYMS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TYMS is not available on ENCORE database.
159 RBPs can affect the levels of TYMS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TYMS is not available on ENCORE database.

159 RBPs can affect the gene expression of TYMS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TYMS	ENSG00000176890.11	335.96970	2561.27680	-2.93050	278.74580	275.77510	HepG2	ZNF622
TYMS	ENSG00000176890.11	166.69650	2152.05680	-3.69040	137.69300	134.09620	HepG2	EIF2S1
TYMS	ENSG00000176890.11	418.30430	2606.03540	-2.63920	89.95030	86.80540	HepG2	DDX3X
TYMS	ENSG00000176890.11	1544.07430	3905.52810	-1.33880	84.97210	83.19330	HepG2	SRFBP1
TYMS	ENSG00000176890.11	551.14770	2606.66060	-2.24170	83.18970	80.28580	HepG2	SF3B1
TYMS	ENSG00000176890.11	1114.00420	2610.47820	-1.22860	75.10970	72.30170	HepG2	ILF2
TYMS	ENSG00000176890.11	5204.48350	2393.54850	1.12050	66.28060	64.66630	HepG2	SRSF1
TYMS	ENSG00000176890.11	602.62150	2200.32520	-1.86840	47.65380	44.64340	HepG2	PABPC4
TYMS	ENSG00000176890.11	1144.54250	2270.64310	-0.98830	43.97290	41.65490	HepG2	DNAJC2
TYMS	ENSG00000176890.11	2825.06760	4849.97400	-0.77970	43.33080	41.55900	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 207 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TYMS is not available on ENCORE database.

8 RBPs can affect the splicing of TYMS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TYMS	ENSG00000176890.11	chr18	+	670691	670867	671379	671451	669071	669173	672859	673578	-0.22300	0.00000	0.00097	2included	HepG2	CSTF2T
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669173	670691	670867	662145	662320	671379	671451	-0.10300	0.00027	0.01862	2included	K562	TIA1
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669153	670691	670867	662145	662320	671379	671451	-0.10000	0.00047	0.01523	2included	K562	TARDBP
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669173	670691	670867	662145	662320	671379	671451	-0.09600	0.00064	0.03274	2included	K562	IGF2BP2
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669173	670691	670867	662145	662320	671379	671451	-0.10000	0.00066	0.06290	2included	K562	EWSR1
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669173	670691	670867	662145	662320	671379	671451	-0.09600	0.00074	0.02124	2included	K562	TARDBP
MXE	TYMS	ENSG00000176890.11	chr18	+	670691	670867	671379	671451	669071	669173	672859	673578	-0.12700	0.00081	0.08141	2included	HepG2	HLTF
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669173	670691	670867	662145	662320	671379	671451	-0.08100	0.00353	0.04988	2included	K562	SRSF1
MXE	TYMS	ENSG00000176890.11	chr18	+	669071	669173	670691	670867	662145	662320	671379	671451	0.07700	0.00650	0.06751	1included	K562	U2AF2

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TYMS

General Information

Functions

Localization

Domains (AlphaFold: TYMS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TYMS is not avaliable on ENCORE database.

25 proteins are bound to TYMS RNA:

eCLIP assay for TYMS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TYMS is not available on ENCORE database.

159 RBPs can affect the gene expression of TYMS :

The Knockdown/knockout RNA-Seq assay for TYMS is not available on ENCORE database.

8 RBPs can affect the splicing of TYMS :

The Knockdown/knockout RNA-Seq assay for TYMS is not avaliable on ENCORE database.