RDH11

General Information

Gene Name : RDH11
Gene ID : ENSG00000072042.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RDH11)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RDH11	ENSG00000072042.12	60.73	53.28	57.00	ENCSR000AEF
HepG2	RDH11	ENSG00000072042.12	50.13	63.96	57.05	ENCSR985KAT
K562	RDH11	ENSG00000072042.12	52.21	52.85	52.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RDH11 is not avaliable on ENCORE database.

Proteins bound to RNA

RDH11 RNA is bound by 17 proteins.

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eCLIP assay for RDH11 is not avaliable on ENCORE database.

17 proteins are bound to RDH11 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	68151749	68151816	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.52184	34.35092	HepG2	SND1
chr14	68162388	68162479	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.36574	19.89746	HepG2	DDX3X
chr14	68151855	68151903	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.26977	19.02243	HepG2	SND1
chr14	68159521	68159585	-	intron-Distal,intron-Proximal	5.30505	17.38555	HepG2	U2AF2
chr14	68156960	68157016	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	6.01668	16.95143	K562	SND1
chr14	68156926	68156961	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.38336	16.70489	HepG2	SND1
chr14	68156981	68157011	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.53393	16.46860	HepG2	SND1
chr14	68144994	68145100	-	3'-UTR,CDS,intron-Distal	4.19718	16.23235	HepG2	SND1
chr14	68156961	68156981	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.44513	14.91806	HepG2	SND1
chr14	68159191	68159251	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.19918	14.01866	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for RDH11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RDH11 is not available on ENCORE database.
145 RBPs can affect the levels of RDH11.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RDH11 is not available on ENCORE database.

145 RBPs can affect the gene expression of RDH11 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RDH11	ENSG00000072042.8	6614.70220	2756.88190	1.26250	95.22590	92.73270	HepG2	PUS1
RDH11	ENSG00000072042.8	6429.46000	2841.97790	1.17770	78.85790	77.09700	HepG2	SSB
RDH11	ENSG00000072042.8	8837.00170	2389.07430	1.88700	55.73110	53.49510	HepG2	HNRNPLL
RDH11	ENSG00000072042.8	2591.29070	5293.69870	-1.03060	52.84670	51.18400	HepG2	NELFE
RDH11	ENSG00000072042.8	5931.17340	2405.68600	1.30180	39.84240	38.06230	HepG2	BOP1
RDH11	ENSG00000072042.8	4502.83990	2074.72560	1.11780	39.02190	36.81890	HepG2	PRPF4
RDH11	ENSG00000072042.8	4711.97210	2589.50180	0.86360	36.57090	34.83930	HepG2	DKC1
RDH11	ENSG00000072042.8	5097.97430	2118.44240	1.26680	35.57820	33.41250	HepG2	NSUN2
RDH11	ENSG00000072042.8	6739.91380	4055.34230	0.73280	33.95220	32.06930	HepG2	UPF1
RDH11	ENSG00000072042.8	2837.54780	4930.20770	-0.79700	33.43790	31.74480	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 173 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RDH11 is not available on ENCORE database.

8 RBPs can affect the splicing of RDH11 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RDH11	ENSG00000072042.8	chr14	-	68156928	68157138			68156928	68157108	68157856	68157961	-0.07500	0.00000	0.00035	shorter	K562	SF3B4
A3SS	RDH11	ENSG00000072042.8	chr14	-	68157856	68157994			68157856	68157961	68159154	68159310	0.06200	0.00000	0.00002	longer	K562	AQR
MXE	RDH11	ENSG00000072042.8	chr14	-	68157856	68157961	68159154	68159310	68156928	68157138	68159650	68159769	0.10400	0.00000	0.00000	1included	HepG2	FTO
MXE	RDH11	ENSG00000072042.8	chr14	-	68151731	68151921	68156928	68157108	68144109	68145140	68157856	68157961	0.13800	0.00003	0.00114	1included	K562	SF3B4
SE	RDH11	ENSG00000072042.8	chr14	-	68157856	68157961			68156928	68157138	68159154	68159310	-0.05500	0.00009	0.00249	excluded	K562	U2AF2
A5SS	RDH11	ENSG00000072042.8	chr14	-	68159650	68159769			68159689	68159769	68159154	68159310	0.06800	0.00012	0.02378	longer	HepG2	TIAL1
MXE	RDH11	ENSG00000072042.8	chr14	-	68157856	68157961	68159154	68159310	68156928	68157138	68159650	68159769	0.13100	0.00021	0.05143	1included	K562	KHDRBS1
MXE	RDH11	ENSG00000072042.8	chr14	-	68157856	68157961	68159154	68159310	68156928	68157138	68159650	68159769	-0.10000	0.00131	0.03907	2included	K562	RBM15
SE	RDH11	ENSG00000072042.8	chr14	-	68157856	68157961			68156928	68157151	68159154	68159310	-0.05800	0.00150	0.01716	excluded	K562	AQR
MXE	RDH11	ENSG00000072042.8	chr14	-	68157856	68157961	68159154	68159310	68156928	68157138	68159650	68159769	-0.07800	0.00340	0.04228	2included	K562	DROSHA

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RDH11

General Information

Functions

Localization

Domains (AlphaFold: RDH11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RDH11 is not avaliable on ENCORE database.

17 proteins are bound to RDH11 RNA:

eCLIP assay for RDH11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RDH11 is not available on ENCORE database.

145 RBPs can affect the gene expression of RDH11 :

The Knockdown/knockout RNA-Seq assay for RDH11 is not available on ENCORE database.

8 RBPs can affect the splicing of RDH11 :

The Knockdown/knockout RNA-Seq assay for RDH11 is not avaliable on ENCORE database.