PTMS

General Information

Gene Name : PTMS
Gene ID : ENSG00000159335.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTMS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTMS	ENSG00000159335.15	26.04	61.65	43.84	ENCSR000AEF
HepG2	PTMS	ENSG00000159335.15	143.85	90.18	117.02	ENCSR985KAT
K562	PTMS	ENSG00000159335.15	278.61	189.73	234.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTMS is not avaliable on ENCORE database.

Proteins bound to RNA

PTMS RNA is bound by 50 proteins.

CanvasJS.com

eCLIP assay for PTMS is not avaliable on ENCORE database.

50 proteins are bound to PTMS RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	6879993	6880060	+	3'-UTR	4.54261	400.00000	K562	PABPC4
chr12	6879824	6879944	+	3'-UTR	4.91732	400.00000	K562	PCBP1
chr12	6879892	6879942	+	3'-UTR	4.84775	400.00000	HepG2	PCBP2
chr12	6879958	6880037	+	3'-UTR	5.28962	400.00000	HepG2	PCBP2
chr12	6879942	6879958	+	3'-UTR	5.36174	400.00000	HepG2	PCBP2
chr12	6879849	6880033	+	3'-UTR	5.31341	400.00000	HepG2	PCBP1
chr12	6879944	6880036	+	3'-UTR	4.79744	400.00000	K562	PCBP1
chr12	6879942	6879993	+	3'-UTR	4.11721	400.00000	K562	PABPC4
chr12	6875532	6875619	+	5'-UTR,intron-Distal	4.63430	400.00000	HepG2	DDX3X
chr12	6879841	6879892	+	3'-UTR	4.53258	77.59901	HepG2	PCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 182 entries

eCLIP assay for PTMS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTMS is not available on ENCORE database.
140 RBPs can affect the levels of PTMS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTMS is not available on ENCORE database.

140 RBPs can affect the gene expression of PTMS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTMS	ENSG00000159335.11	1499.34530	4868.98390	-1.69930	139.19290	137.15070	HepG2	SRSF1
PTMS	ENSG00000159335.11	9317.21090	3861.55240	1.27060	102.57560	99.69540	HepG2	UPF1
PTMS	ENSG00000159335.11	1461.80530	3961.14040	-1.43820	95.73130	93.47220	HepG2	SRSF9
PTMS	ENSG00000159335.11	7648.99000	3226.20110	1.24530	86.98120	83.96590	K562	AGGF1
PTMS	ENSG00000159335.11	1817.02490	4480.40540	-1.30210	74.75250	72.82730	HepG2	PTBP1
PTMS	ENSG00000159335.11	810.75030	2441.35400	-1.59040	70.00540	68.09750	HepG2	RBM22
PTMS	ENSG00000159335.11	2303.67810	4643.98110	-1.01140	50.39400	48.44380	HepG2	RECQL
PTMS	ENSG00000159335.11	2671.47370	1191.60700	1.16460	50.19760	47.99060	HepG2	SAFB2
PTMS	ENSG00000159335.11	1719.67270	4376.31220	-1.34760	44.72820	42.82460	HepG2	TAF15
PTMS	ENSG00000159335.11	2357.27300	4403.24320	-0.90140	40.03140	38.20590	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 167 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTMS is not available on ENCORE database.

13 RBPs can affect the splicing of PTMS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTMS	ENSG00000159335.11	chr12	+	6879322	6879384			6879086	6879165	6879557	6880041	-0.05400	0.00000	0.00000	excluded	HepG2	U2AF1
SE	PTMS	ENSG00000159335.11	chr12	+	6879322	6879384			6879009	6879165	6879557	6879664	-0.08500	0.00000	0.00000	excluded	HepG2	U2AF2
SE	PTMS	ENSG00000159335.11	chr12	+	6879334	6879384			6879086	6879165	6879557	6880116	-0.12100	0.00000	0.00000	excluded	HepG2	SF3B4
SE	PTMS	ENSG00000159335.11	chr12	+	6879334	6879384			6879086	6879165	6879557	6880116	-0.09900	0.00000	0.00072	excluded	HepG2	SRSF9
MXE	PTMS	ENSG00000159335.11	chr12	+	6879009	6879165	6879322	6879384	6878768	6878840	6879557	6880116	0.11800	0.00000	0.00000	1included	HepG2	U2AF2
MXE	PTMS	ENSG00000159335.11	chr12	+	6879086	6879165	6879322	6879384	6878768	6878840	6879557	6880109	0.12300	0.00000	0.00008	1included	K562	FXR2
SE	PTMS	ENSG00000159335.11	chr12	+	6879334	6879384			6879086	6879165	6879557	6879968	-0.07500	0.00003	0.00903	excluded	K562	ZC3H8
MXE	PTMS	ENSG00000159335.11	chr12	+	6879086	6879165	6879322	6879384	6878768	6878840	6879557	6879968	-0.16300	0.00008	0.00285	2included	K562	DROSHA
SE	PTMS	ENSG00000159335.11	chr12	+	6879334	6879384			6879086	6879165	6879557	6880116	-0.07800	0.00010	0.01682	excluded	HepG2	TAF15
SE	PTMS	ENSG00000159335.11	chr12	+	6875715	6875916			6874681	6874804	6878768	6878840	-0.17200	0.00027	0.02724	excluded	K562	SUPV3L1

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTMS

General Information

Functions

Localization

Domains (AlphaFold: PTMS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTMS is not avaliable on ENCORE database.

50 proteins are bound to PTMS RNA:

eCLIP assay for PTMS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTMS is not available on ENCORE database.

140 RBPs can affect the gene expression of PTMS :

The Knockdown/knockout RNA-Seq assay for PTMS is not available on ENCORE database.

13 RBPs can affect the splicing of PTMS :

The Knockdown/knockout RNA-Seq assay for PTMS is not avaliable on ENCORE database.