NUP107

General Information

Gene Name : NUP107
Gene ID : ENSG00000111581.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NUP107)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NUP107	ENSG00000111581.9	92.73	75.22	83.97	ENCSR000AEF
HepG2	NUP107	ENSG00000111581.9	46.06	87.75	66.91	ENCSR985KAT
K562	NUP107	ENSG00000111581.9	121.51	133.74	127.62	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NUP107 is not avaliable on ENCORE database.

Proteins bound to RNA

NUP107 RNA is bound by 28 proteins.

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eCLIP assay for NUP107 is not avaliable on ENCORE database.

28 proteins are bound to NUP107 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	69129085	69129119	+	3'-UTR,CDS,intron-Distal	4.60429	18.21824	HepG2	BCLAF1
chr12	69136362	69136437	+	3'-UTR	6.98091	17.78581	HepG2	SUB1
chr12	69108310	69108364	+	intron-Distal	5.90424	17.61906	K562	KHSRP
chr12	69135592	69135605	+	3'-UTR,CDS,intron-Proximal	5.13011	14.51064	HepG2	BCLAF1
chr12	69129119	69129124	+	3'-UTR,CDS,intron-Distal	4.31936	13.72084	HepG2	BCLAF1
chr12	69083424	69083536	+	intron-Distal,intron-Proximal	6.40362	13.16771	K562	QKI
chr12	69135791	69135862	+	intron-Distal,intron-Proximal	4.19703	12.94987	K562	KHSRP
chr12	69100541	69100626	+	intron-Distal	4.86513	12.91918	K562	UCHL5
chr12	69115597	69115659	+	3'-UTR,CDS,intron-Proximal	3.82359	12.43406	K562	AQR
chr12	69129029	69129072	+	3'-UTR,CDS,intron-Distal	5.77650	12.09921	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 131 entries

eCLIP assay for NUP107 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NUP107 is not available on ENCORE database.
148 RBPs can affect the levels of NUP107.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NUP107 is not available on ENCORE database.

148 RBPs can affect the gene expression of NUP107 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NUP107	ENSG00000111581.5	545.78130	2040.45360	-1.90250	65.26250	62.86580	HepG2	PUF60
NUP107	ENSG00000111581.5	594.46650	1230.61440	-1.04970	29.45090	27.67610	HepG2	UPF1
NUP107	ENSG00000111581.5	534.55670	1233.39610	-1.20620	28.45800	27.16650	HepG2	TIAL1
NUP107	ENSG00000111581.5	1105.84460	2014.67620	-0.86540	25.75360	24.11610	HepG2	SRSF5
NUP107	ENSG00000111581.5	664.95140	1244.36350	-0.90410	23.07050	21.64100	HepG2	TRIM56
NUP107	ENSG00000111581.5	1835.98240	986.18200	0.89650	23.01030	21.61180	HepG2	TAF15
NUP107	ENSG00000111581.5	393.73350	934.52840	-1.24700	23.03770	21.53280	HepG2	RPS19
NUP107	ENSG00000111581.5	780.51200	1353.44280	-0.79410	22.22190	21.03650	HepG2	ZNF622
NUP107	ENSG00000111581.5	1954.59010	3591.31200	-0.87760	20.54780	18.99890	K562	HNRNPC
NUP107	ENSG00000111581.5	623.05440	1368.17910	-1.13480	20.06430	18.44110	HepG2	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 179 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NUP107 is not available on ENCORE database.

11 RBPs can affect the splicing of NUP107 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	NUP107	ENSG00000111581.5	chr12	+	69114897	69114957			69113357	69113434	69115620	69115766	-0.06500	0.00008	excluded	K562	SF3B4
SE	NUP107	ENSG00000111581.5	chr12	+	69121096	69121169			69120278	69120397	69124889	69125040	-0.07300	0.00007	excluded	K562	AQR
SE	NUP107	ENSG00000111581.5	chr12	+	69119506	69119576			69115883	69115932	69120278	69120397	-0.05500	0.00003	excluded	K562	AQR
SE	NUP107	ENSG00000111581.5	chr12	+	69114897	69114957			69113357	69113434	69115620	69115766	-0.10000	0.00000	excluded	K562	U2AF1
SE	NUP107	ENSG00000111581.5	chr12	+	69114897	69114957			69113357	69113434	69115620	69115766	-0.20900	0.00000	excluded	K562	U2AF2
SE	NUP107	ENSG00000111581.5	chr12	+	69114897	69114957			69113357	69113434	69115620	69115766	-0.05500	0.00000	excluded	K562	AGGF1
A3SS	NUP107	ENSG00000111581.5	chr12	+	69082722	69082833			69082741	69082833	69080785	69080853	0.06300	0.00000	longer	K562	AQR
A3SS	NUP107	ENSG00000111581.5	chr12	+	69084382	69084526			69084410	69084526	69083312	69083399	0.12400	0.00000	longer	K562	HNRNPC
A5SS	NUP107	ENSG00000111581.5	chr12	+	69128487	69128716			69128487	69128613	69129010	69129124	0.06600	0.00000	longer	K562	AQR
MXE	NUP107	ENSG00000111581.5	chr12	+	69119506	69119576	69120278	69120397	69115883	69115932	69124889	69125040	-0.09200	0.00000	2included	K562	AQR

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NUP107

General Information

Functions

Localization

Domains (AlphaFold: NUP107)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NUP107 is not avaliable on ENCORE database.

28 proteins are bound to NUP107 RNA:

eCLIP assay for NUP107 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NUP107 is not available on ENCORE database.

148 RBPs can affect the gene expression of NUP107 :

The Knockdown/knockout RNA-Seq assay for NUP107 is not available on ENCORE database.

11 RBPs can affect the splicing of NUP107 :

The Knockdown/knockout RNA-Seq assay for NUP107 is not avaliable on ENCORE database.