KTN1

General Information

Gene Name : KTN1
Gene ID : ENSG00000126777.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KTN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KTN1	ENSG00000126777.17	84.72	74.12	79.42	ENCSR000AEF
HepG2	KTN1	ENSG00000126777.17	64.67	118.42	91.55	ENCSR985KAT
K562	KTN1	ENSG00000126777.17	53.60	53.97	53.78	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KTN1 is not avaliable on ENCORE database.

Proteins bound to RNA

KTN1 RNA is bound by 46 proteins.

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eCLIP assay for KTN1 is not avaliable on ENCORE database.

46 proteins are bound to KTN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	56103915	56104011	+	3'-UTR,CDS,intron-Proximal	6.37940	82.00712	HepG2	BCLAF1
chr14	56114775	56114821	+	CDS,intron-Proximal	6.09784	70.65691	HepG2	BCLAF1
chr14	56083260	56083290	+	CDS,intron-Distal	6.10526	60.42871	HepG2	BCLAF1
chr14	56084772	56084852	+	CDS,intron-Distal	4.44402	56.79735	HepG2	BCLAF1
chr14	56107133	56107160	+	CDS	6.38389	56.46247	HepG2	BCLAF1
chr14	56128243	56128331	+	3'-UTR,5'-UTR,CDS,intron-Proximal	6.27438	53.37679	HepG2	BCLAF1
chr14	56108409	56108433	+	CDS,intron-Proximal	7.72830	50.74580	HepG2	BCLAF1
chr14	56122764	56122850	+	3'-UTR,CDS	5.23050	49.02481	HepG2	BCLAF1
chr14	56046947	56047021	+	5'-UTR,intron-Distal	4.77007	48.33776	HepG2	DDX3X
chr14	56078779	56078886	+	CDS,intron-Distal	4.35689	47.66730	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 374 entries

eCLIP assay for KTN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KTN1 is not available on ENCORE database.
120 RBPs can affect the levels of KTN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KTN1 is not available on ENCORE database.

120 RBPs can affect the gene expression of KTN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KTN1	ENSG00000126777.13	2907.20440	7819.24460	-1.42740	79.22100	77.35640	HepG2	ZNF622
KTN1	ENSG00000126777.13	1994.32220	4667.53300	-1.22680	37.70590	35.86480	HepG2	HNRNPA1
KTN1	ENSG00000126777.13	2742.20840	4582.22540	-0.74070	36.70890	34.58720	HepG2	DNAJC2
KTN1	ENSG00000126777.13	4033.09980	6864.07500	-0.76720	30.34180	28.67770	HepG2	UTP3
KTN1	ENSG00000126777.13	3486.73450	9173.80030	-1.39560	28.28240	26.41910	HepG2	NCBP2
KTN1	ENSG00000126777.13	2893.46720	6074.36430	-1.06990	26.98730	25.35320	K562	AQR
KTN1	ENSG00000126777.13	5257.39650	8413.70740	-0.67840	26.31170	24.95710	HepG2	PTBP1
KTN1	ENSG00000126777.13	2751.19420	5011.60220	-0.86520	25.67580	24.44130	HepG2	TIAL1
KTN1	ENSG00000126777.13	6143.15510	9143.16160	-0.57370	23.40960	22.32730	HepG2	SRSF1
KTN1	ENSG00000126777.13	5425.49900	8835.89830	-0.70360	22.13760	20.95520	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 153 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KTN1 is not available on ENCORE database.

43 RBPs can affect the splicing of KTN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	KTN1	ENSG00000126777.13	chr14	+	56139889	56139973	56139646	56139730	56142552	56142636	0.34800	0.00000	included	K562	SRSF1
SE	KTN1	ENSG00000126777.13	chr14	+	56147403	56147459	56146282	56146403	56150816	56151297	0.14100	0.00000	included	K562	SRSF1
SE	KTN1	ENSG00000126777.13	chr14	+	56130672	56130759	56128239	56128330	56133958	56134048	0.18500	0.00226	included	HepG2	ILF3
SE	KTN1	ENSG00000126777.13	chr14	+	56130672	56130759	56128239	56128330	56133958	56134048	0.17900	0.00035	included	HepG2	QKI
SE	KTN1	ENSG00000126777.13	chr14	+	56139889	56139973	56139646	56139730	56142552	56142636	-0.15500	0.00000	excluded	HepG2	QKI
SE	KTN1	ENSG00000126777.13	chr14	+	56130672	56130759	56128239	56128330	56133958	56134048	0.37700	0.00000	included	HepG2	U2AF2
SE	KTN1	ENSG00000126777.13	chr14	+	56139889	56139973	56139646	56139730	56142552	56142636	0.15300	0.00016	included	HepG2	AKAP1
SE	KTN1	ENSG00000126777.13	chr14	+	56118004	56118093	56117286	56117355	56118607	56118645	0.05300	0.00000	included	K562	AQR
SE	KTN1	ENSG00000126777.13	chr14	+	56113690	56113725	56108409	56108478	56114742	56114833	-0.13600	0.00000	excluded	K562	AQR
SE	KTN1	ENSG00000126777.13	chr14	+	56130672	56130759	56128239	56128330	56133958	56134048	0.24200	0.00021	included	K562	FXR1

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KTN1

General Information

Functions

Localization

Domains (AlphaFold: KTN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KTN1 is not avaliable on ENCORE database.

46 proteins are bound to KTN1 RNA:

eCLIP assay for KTN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KTN1 is not available on ENCORE database.

120 RBPs can affect the gene expression of KTN1 :

The Knockdown/knockout RNA-Seq assay for KTN1 is not available on ENCORE database.

43 RBPs can affect the splicing of KTN1 :

The Knockdown/knockout RNA-Seq assay for KTN1 is not avaliable on ENCORE database.