CDC45

General Information

Gene Name : CDC45
Gene ID : ENSG00000093009.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDC45)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDC45	ENSG00000093009.9	44.01	42.96	43.48	ENCSR000AEF
HepG2	CDC45	ENSG00000093009.9	31.74	31.46	31.60	ENCSR985KAT
K562	CDC45	ENSG00000093009.9	297.61	289.50	293.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDC45 is not avaliable on ENCORE database.

Proteins bound to RNA

CDC45 RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for CDC45 is not avaliable on ENCORE database.

45 proteins are bound to CDC45 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	19467679	19467742	+	CDS,intron-Proximal	5.24325	400.00000	K562	AQR
chr22	19467626	19467652	+	intron-Proximal	5.23917	400.00000	K562	AQR
chr22	19467652	19467679	+	intron-Proximal	5.44849	400.00000	K562	AQR
chr22	19486711	19486715	+	intron-Proximal	7.07261	82.23578	K562	AQR
chr22	19486676	19486711	+	intron-Proximal	5.77609	72.14222	K562	AQR
chr22	19481910	19481941	+	intron-Proximal	6.64603	59.62665	K562	AQR
chr22	19486674	19486676	+	intron-Proximal	5.64488	54.93930	K562	AQR
chr22	19481941	19481948	+	intron-Proximal	6.98042	49.60295	K562	AQR
chr22	19481905	19481910	+	intron-Proximal	6.31681	45.72567	K562	AQR
chr22	19468475	19468504	+	CDS,intron-Proximal	4.54829	43.06107	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 174 entries

eCLIP assay for CDC45 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDC45 is not available on ENCORE database.
152 RBPs can affect the levels of CDC45.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDC45 is not available on ENCORE database.

152 RBPs can affect the gene expression of CDC45 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDC45	ENSG00000093009.5	55.75280	489.89180	-3.13530	78.15400	76.30230	HepG2	ZNF622
CDC45	ENSG00000093009.5	48.04880	573.50150	-3.57720	75.22640	72.89640	HepG2	RPLP0
CDC45	ENSG00000093009.5	77.25920	545.26170	-2.81920	67.55300	65.92690	HepG2	SRFBP1
CDC45	ENSG00000093009.5	55.12190	482.75120	-3.13060	61.43430	59.62630	HepG2	RBM22
CDC45	ENSG00000093009.5	28.46900	410.54220	-3.85010	60.79340	58.74950	HepG2	BOP1
CDC45	ENSG00000093009.5	2749.28470	8544.74110	-1.63600	59.08450	56.73180	K562	AQR
CDC45	ENSG00000093009.5	999.71120	2887.69200	-1.53030	59.62310	56.30390	K562	U2AF2
CDC45	ENSG00000093009.5	50.47340	427.09390	-3.08100	42.80770	40.78110	HepG2	SUPV3L1
CDC45	ENSG00000093009.5	4716.11850	8348.50660	-0.82390	41.25110	39.10860	K562	AGGF1
CDC45	ENSG00000093009.5	5369.61010	8117.34370	-0.59620	39.16740	36.92380	K562	NSUN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 203 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDC45 is not available on ENCORE database.

26 RBPs can affect the splicing of CDC45 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CDC45	ENSG00000093009.5	chr22	+	19481996	19482125	19481744	19481905	19483503	19483552	-0.13000	0.00000	excluded	K562	SRSF1
SE	CDC45	ENSG00000093009.5	chr22	+	19470212	19470350	19468451	19468568	19471384	19471528	-0.07300	0.00006	excluded	K562	AQR
SE	CDC45	ENSG00000093009.5	chr22	+	19482015	19482125	19481849	19481905	19483503	19483552	-0.12700	0.00000	excluded	K562	FXR1
SE	CDC45	ENSG00000093009.5	chr22	+	19481996	19482125	19481849	19481905	19483503	19483552	-0.07000	0.00234	excluded	K562	APOBEC3C
SE	CDC45	ENSG00000093009.5	chr22	+	19502487	19502571	19502271	19502410	19504049	19504168	-0.09200	0.00000	excluded	K562	TARDBP
SE	CDC45	ENSG00000093009.5	chr22	+	19502487	19502571	19496052	19496214	19504049	19504168	-0.10900	0.00000	excluded	K562	HNRNPC
A3SS	CDC45	ENSG00000093009.5	chr22	+	19470212	19470350	19470313	19470350	19468475	19468568	-0.14900	0.00000	shorter	K562	SUPV3L1
A3SS	CDC45	ENSG00000093009.5	chr22	+	19504303	19504416	19504339	19504416	19504049	19504168	0.06200	0.00000	longer	K562	AQR
A3SS	CDC45	ENSG00000093009.5	chr22	+	19468451	19468568	19468475	19468568	19467680	19467740	0.05500	0.00000	longer	K562	AQR
A5SS	CDC45	ENSG00000093009.5	chr22	+	19467413	19467580	19467413	19467542	19467680	19467740	0.07300	0.00001	longer	K562	RBM22

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDC45

General Information

Functions

Localization

Domains (AlphaFold: CDC45)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDC45 is not avaliable on ENCORE database.

45 proteins are bound to CDC45 RNA:

eCLIP assay for CDC45 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDC45 is not available on ENCORE database.

152 RBPs can affect the gene expression of CDC45 :

The Knockdown/knockout RNA-Seq assay for CDC45 is not available on ENCORE database.

26 RBPs can affect the splicing of CDC45 :

The Knockdown/knockout RNA-Seq assay for CDC45 is not avaliable on ENCORE database.