ARID1A

General Information

Gene Name : ARID1A
Gene ID : ENSG00000117713.19
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ARID1A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ARID1A	ENSG00000117713.19	37.23	51.10	44.16	ENCSR000AEF
HepG2	ARID1A	ENSG00000117713.19	35.87	27.64	31.75	ENCSR985KAT
K562	ARID1A	ENSG00000117713.19	57.04	47.17	52.11	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ARID1A is not avaliable on ENCORE database.

Proteins bound to RNA

ARID1A RNA is bound by 75 proteins.

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eCLIP assay for ARID1A is not avaliable on ENCORE database.

75 proteins are bound to ARID1A RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	27108108	27108176	+	3'-UTR	6.42488	400.00000	K562	PUM2
chr1	27108033	27108108	+	3'-UTR	4.98460	400.00000	K562	PUM2
chr1	27108176	27108212	+	3'-UTR	5.36275	65.51758	K562	PUM2
chr1	27108227	27108314	+	3'-UTR	4.76122	56.70465	K562	PUM2
chr1	27107442	27107520	+	3'-UTR	5.56069	51.89069	HepG2	PCBP2
chr1	27107385	27107442	+	3'-UTR	5.11602	50.47877	HepG2	PCBP2
chr1	27108358	27108407	+	3'-UTR	3.92661	42.35211	K562	PUM2
chr1	27057838	27057991	+	CDS	3.97732	34.93832	K562	IGF2BP2
chr1	27107340	27107492	+	3'-UTR	5.01971	32.84777	K562	PCBP1
chr1	27025369	27025389	+	intron-Distal	4.35361	30.44614	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 455 entries

eCLIP assay for ARID1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ARID1A is not available on ENCORE database.
88 RBPs can affect the levels of ARID1A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ARID1A is not available on ENCORE database.

88 RBPs can affect the gene expression of ARID1A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ARID1A	ENSG00000117713.13	1059.32420	2453.34790	-1.21160	19.68820	18.40500	HepG2	AKAP1
ARID1A	ENSG00000117713.13	8448.60970	4872.77080	0.79390	16.42680	15.15570	K562	AQR
ARID1A	ENSG00000117713.13	3234.31700	2155.30940	0.58550	16.37030	15.07500	HepG2	RECQL
ARID1A	ENSG00000117713.13	3413.03540	2313.98370	0.56060	14.75940	13.69590	HepG2	NELFE
ARID1A	ENSG00000117713.13	4959.62810	8483.82650	-0.77450	14.05820	12.87760	K562	PUS1
ARID1A	ENSG00000117713.13	3048.57540	4060.66990	-0.41360	10.83940	10.02480	HepG2	SRFBP1
ARID1A	ENSG00000117713.13	2750.50640	3746.41340	-0.44580	9.94440	8.77690	HepG2	AUH
ARID1A	ENSG00000117713.13	3235.58390	2284.49830	0.50200	9.82960	8.32560	K562	EIF3G
ARID1A	ENSG00000117713.13	5563.48800	3639.74040	0.61210	8.92940	7.79320	HepG2	U2AF1
ARID1A	ENSG00000117713.13	3764.23300	2898.83130	0.37680	8.62620	7.62910	HepG2	SUCLG1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 100 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ARID1A is not available on ENCORE database.

9 RBPs can affect the splicing of ARID1A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27099302	27099478			27099305	27099478	27098990	27099123	0.29600	0.00000	0.00172	longer	K562	EIF3G
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27099302	27099478			27099305	27099478	27098990	27099123	0.23000	0.00000	0.00043	longer	K562	PTBP1
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27099302	27099478			27099305	27099478	27098990	27099123	0.22100	0.00001	0.00234	longer	K562	RBM22
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27099302	27099478			27099305	27099478	27098990	27099123	0.18800	0.00015	0.02387	longer	K562	FXR1
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27102067	27102198			27102078	27102198	27101470	27101711	-0.12500	0.00028	0.01948	shorter	K562	SF3B4
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27099302	27099478			27099305	27099478	27098990	27099123	0.25500	0.00030	0.07497	longer	K562	DROSHA
A3SS	ARID1A	ENSG00000117713.13	chr1	+	27099806	27099987			27099836	27099987	27099363	27099478	0.06100	0.00060	0.00440	longer	K562	AQR
MXE	ARID1A	ENSG00000117713.13	chr1	+	27094280	27094490	27097609	27097817	27092947	27093057	27098990	27099123	-0.06600	0.00062	0.02255	2included	K562	PPIL4
SE	ARID1A	ENSG00000117713.13	chr1	+	27060598	27060764			27059166	27059283	27087346	27087587	0.07100	0.00076	0.09851	included	K562	MATR3
SE	ARID1A	ENSG00000117713.13	chr1	+	27060598	27060764			27059166	27059283	27087346	27087587	0.05700	0.00514	0.07561	included	K562	SF3B4

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ARID1A

General Information

Functions

Localization

Domains (AlphaFold: ARID1A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ARID1A is not avaliable on ENCORE database.

75 proteins are bound to ARID1A RNA:

eCLIP assay for ARID1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ARID1A is not available on ENCORE database.

88 RBPs can affect the gene expression of ARID1A :

The Knockdown/knockout RNA-Seq assay for ARID1A is not available on ENCORE database.

9 RBPs can affect the splicing of ARID1A :

The Knockdown/knockout RNA-Seq assay for ARID1A is not avaliable on ENCORE database.