ZC3H7A

General Information

Gene Name : ZC3H7A
Gene ID : ENSG00000122299.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZC3H7A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZC3H7A	ENSG00000122299.11	77.96	64.55	71.25	ENCSR000AEF
HepG2	ZC3H7A	ENSG00000122299.11	41.10	66.20	53.65	ENCSR985KAT
K562	ZC3H7A	ENSG00000122299.11	28.92	33.02	30.97	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	ZC3H7A-BGRSLV08-RS293		ZC3H7A	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
ZC3H7A	Ribo-STAMP-293T	shRNA	BGRSLV07-41,BGRSLV07-42	BGRSLV07-1,BGRSLV07-2		NotSatisfied	ENCORE2
ZC3H7A	Ribo-STAMP-293T	shRNA	ZC3H7A-BGRSLV08-7,ZC3H7A-BGRSLV08-8	NT-BGRSLV08-1,NT-BGRSLV08-2	,	Released	ENCORE2
ZC3H7A	293T	shRNA	BG293LV05-65,BG293LV05-66	BG293LV05-1,BG293LV05-2		NotSatisfied	ENCORE2
ZC3H7A	293T	shRNA	BG293LV05-67,BG293LV05-68	BG293LV05-1,BG293LV05-2		NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZC3H7A is not avaliable on ENCORE database.

Proteins bound to RNA

ZC3H7A RNA is bound by 27 proteins.

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eCLIP assay for ZC3H7A is not avaliable on ENCORE database.

27 proteins are bound to ZC3H7A RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	11855765	11855857	-	CDS,intron-Distal,intron-Proximal	3.92226	17.16359	HepG2	BCLAF1
chr16	11857328	11857411	-	CDS,intron-Distal,intron-Proximal	3.00853	14.74239	HepG2	BCLAF1
chr16	11855330	11855425	-	CDS,intron-Distal,intron-Proximal	4.18307	13.77796	HepG2	U2AF2
chr16	11861271	11861309	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.71038	11.85134	HepG2	BCLAF1
chr16	11873631	11873691	-	intron-Distal	4.46326	11.19329	HepG2	HNRNPL
chr16	11873033	11873082	-	CDS,intron-Distal,intron-Proximal	4.94430	11.09109	HepG2	BCLAF1
chr16	11870175	11870212	-	CDS,intron-Distal,intron-Proximal	3.95443	10.98590	HepG2	BCLAF1
chr16	11862172	11862278	-	3'-UTR,CDS,intron-Distal	3.27697	10.78542	K562	ZNF622
chr16	11890797	11890857	-	5'-UTR,intron-Distal,intron-Proximal	4.88753	10.43503	HepG2	EFTUD2
chr16	11890939	11891010	-	5'-UTR,intron-Distal	3.86932	10.32997	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 102 entries

eCLIP assay for ZC3H7A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZC3H7A is not available on ENCORE database.
63 RBPs can affect the levels of ZC3H7A.

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The Knockdown/knockout RNA-Seq assay for ZC3H7A is not available on ENCORE database.

63 RBPs can affect the gene expression of ZC3H7A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZC3H7A	ENSG00000122299.7	2654.88460	1635.54240	0.69880	21.58610	20.52990	HepG2	SRSF1
ZC3H7A	ENSG00000122299.7	1057.05570	1843.86570	-0.80270	14.23030	12.48960	K562	GRSF1
ZC3H7A	ENSG00000122299.7	2265.53320	1470.25730	0.62370	13.33600	12.24290	HepG2	TAF15
ZC3H7A	ENSG00000122299.7	852.18100	1454.67370	-0.77150	14.03700	11.99760	K562	SF3B4
ZC3H7A	ENSG00000122299.7	3276.50340	2085.17540	0.65190	9.03810	8.10590	K562	PUS1
ZC3H7A	ENSG00000122299.7	1092.01280	1904.44240	-0.80240	8.72070	7.53540	HepG2	SF3B1
ZC3H7A	ENSG00000122299.7	3004.60490	1971.73810	0.60760	8.27800	7.35120	K562	AQR
ZC3H7A	ENSG00000122299.7	2111.72220	2724.79100	-0.36770	7.16150	6.45900	HepG2	SRFBP1
ZC3H7A	ENSG00000122299.7	1483.98180	984.89970	0.59130	7.60810	6.34150	HepG2	FUBP3
ZC3H7A	ENSG00000122299.7	1929.56690	1468.94830	0.39340	7.14680	5.84570	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 72 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZC3H7A is not available on ENCORE database.

20 RBPs can affect the splicing of ZC3H7A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11870175	11870214	11868835	11868869	11870307	11870388	-0.19200	0.00000	excluded	HepG2	U2AF2
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11856526	11856603	11855765	11855899	11857333	11857548	-0.34300	0.00000	excluded	K562	AQR
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11855261	11855367	11852286	11852395	11855765	11855899	-0.44700	0.00000	excluded	K562	AQR
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11862886	11862951	11862170	11862357	11864638	11864843	-0.48900	0.00000	excluded	K562	AQR
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11862886	11862951	11862170	11862357	11864638	11864843	-0.32600	0.00000	excluded	K562	PUS1
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11856526	11856603	11855765	11855899	11857333	11857515	-0.20300	0.00000	excluded	K562	PUS1
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11862886	11862951	11862170	11862357	11864638	11864843	-0.35000	0.00000	excluded	HepG2	SF3A3
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11856526	11856603	11855765	11855899	11857333	11857515	-0.12400	0.00025	excluded	HepG2	SF3A3
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11855261	11855367	11852286	11852395	11855765	11855899	-0.35800	0.00000	excluded	HepG2	SF3A3
SE	ZC3H7A	ENSG00000122299.7	chr16	-	11855261	11855367	11852286	11852395	11855765	11855899	-0.18700	0.00017	excluded	HepG2	SF3B4

Showing 1 to 10 of 62 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZC3H7A

General Information

Functions

Localization

Domains (AlphaFold: ZC3H7A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZC3H7A is not avaliable on ENCORE database.

27 proteins are bound to ZC3H7A RNA:

eCLIP assay for ZC3H7A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZC3H7A is not available on ENCORE database.

63 RBPs can affect the gene expression of ZC3H7A :

The Knockdown/knockout RNA-Seq assay for ZC3H7A is not available on ENCORE database.

20 RBPs can affect the splicing of ZC3H7A :

The Knockdown/knockout RNA-Seq assay for ZC3H7A is not avaliable on ENCORE database.