Notice: Undefined offset: 1 in /website/encore_alpha/gene/index.php on line 599
non-target RNA-Seq in HepG2



non-target      CRISPR in HepG2      Control:

General Information

List KD experiments controlled by BGHcLV43-1 and BGHcLV43-2


NT-BGHcLV43-1,NT-BGHcLV43-2:
  • BRD4-BGHcLV43-HepG2
  • CNOT3-BGHcLV43-HepG2
  • CRKL-BGHcLV43-HepG2
  • DDX41-BGHcLV43-HepG2
  • EIF2AK2-BGHcLV43-HepG2
  • EIF1-BGHcLV43-HepG2
  • EIF4H-BGHcLV43-HepG2
  • HEXIM1-BGHcLV43-HepG2
  • KARS-BGHcLV43-HepG2
  • LARP1-BGHcLV43-HepG2
  • NAA10-BGHcLV43-HepG2
  • NOP2-BGHcLV43-HepG2
  • PABPC1-BGHcLV43-HepG2
  • PARK7-BGHcLV43-HepG2
  • PKM-BGHcLV43-HepG2
  • PRKRA-BGHcLV43-HepG2
  • PSMD4-BGHcLV43-HepG2
  • RBBP5-BGHcLV43-HepG2
  • SEC24D-BGHcLV43-HepG2
  • SSU72-BGHcLV43-HepG2
  • TFAM-BGHcLV43-HepG2
  • UBA2-BGHcLV43-HepG2
  • USP15-BGHcLV43-HepG2
  • USP39-BGHcLV43-HepG2
  • VASP-BGHcLV43-HepG2




    • Experiment Information (Status: Sequenced)
    BGHcLV43-1BGHcLV43-2
    idx13691370
    TRCN#_or_BGC#
    shRNA_or_gRNA_sequence
    PAM
    Namenonnon
    Sample_IDBGHcLV43-1BGHcLV43-2
    transduction_Date6/6/246/6/24
    daysD6D6
    RBP_namenon-targetnon-target
    qPCR_result
    Ave_qPCR
    RT-qPCR_primer-F
    RT-qPCR_primer-R
    protein_conc03098
    WB_result
    Ave_WB
    WB_DONE_date
    MW
    IP
    antibody_Cat#
    Antibody DCC ID
    submitted_to_DCC_date
    Rep1_TPM00
    Rep2_TPM00
    ActionReadyReady
    Library_start_date
    repeat_library
    Note
    ID75667567




    Western Blot
    Western Blot info was not avaliable




    Experiment Status
    BGHcLV43-1BGHcLV43-2
    Sample_IDBGHcLV43-1BGHcLV43-2
    Sample Name
    Sample NameNT-BGHcLV43-1NT-BGHcLV43-2
    RBPnon-targetnon-target
    Cell_LineHepG2HepG2
    Exp UID
    StatusSequencedSequenced
    Status_date2024-10-272024-10-27
    ProjectENCORE2ENCORE2
    Note
    ID1322813229




    Library-Prep Information
    BGHcLV43-1BGHcLV43-2
    Sample #12
    Sample NameNT-BGHcLV43-1NT-BGHcLV43-2
    Sample_Name_Alias
    Index Well PositionA06B06
    Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
    LibPrep_date2024-07-222024-07-22
    Lib_IDLib-240722Lib-240722
    Tecan_Location
    Tecan
    Tecan_date
    Size_bp292304
    Peak_Molarity103.0091.70
    libSampleQC_DNA_WellDNA_Library_set74/set1/A1.pngDNA_Library_set74/set1/B1.png
    RIN10.010.0
    libSample_RNA_WellRNA_Library_set74/set1/E6.pngRNA_Library_set74/set1/F6.png
    SampleQC_methodTapeStation_2022TapeStation_2022
    SampleQC_date2024-07-232024-07-23
    Sample_IDBGHcLV43-1BGHcLV43-2
    RBPNTNT
    Batch_IDBGHcLV43BGHcLV43
    WB_result0.0000.000
    Library DescriptionTruSeq mRNATruSeq mRNA
    Repeat_Library_Suffix
    Lib_StatusSendToSequenceSendToSequence
    ProjectENCORE2ENCORE2
    ID43604361




    Sequencing Information
    BGHcLV43-1BGHcLV43-2
    Sample_IDBGHcLV43-1BGHcLV43-2
    Sample NameNT-BGHcLV43-1NT-BGHcLV43-2
    Pool IDPool-240723Pool-240723
    LocalServer_folderset74set74
    total_reads32,564,93630,636,500
    total_aligned_reads27,791,47228,037,876
    unique_aligned_reads26,088,26726,369,519
    percent_uniqueAligned0.801120.86072
    correlation_replicates0.9956770.995677
    spikein_reads10,93214,410
    percent_spikeins0.000340.00047
    original_ReadLength101101
    QC_StatusReadyToSubmitReadyToSubmit
    ID32273228




    Data Submission Information
    DCC submission information was not avaliable




    File Information
    Files of the experiment was not avaliable in the database