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USP39 RNA-Seq in HepG2



USP39      CRISPR in HepG2      Control:

General Information
RBPUSP39
Cell_LineHepG2
MethodCRISPR
Exp_NameUSP39-BGHcLV43-HepG2
ENCODE_series_ID
Batch_IDBGHcLV43
Pool IDPool-240723
Local_Set_Nameset74
ENCODE_KD_Exp_ID
ENCODE_CN_Exp_ID
Rep1USP39-BGHcLV43-61
Rep2USP39-BGHcLV43-62
CN1NT-BGHcLV43-1
CN2NT-BGHcLV43-2
Rep1_qPCR0.0
Rep2_qPCR0.0
Rep1_WB63.6
Rep2_WB63.3
Antibody Cat#23303S
Antibody Lot#lot # 1
Antibody DCC ID
StatusSubmitted
ProjectENCORE2
ID1593




Experiment Information (Status: Sequenced)
BGHcLV43-61BGHcLV43-62
idx14291430
TRCN#_or_BGC#BGC#0001203BGC#0001203
shRNA_or_gRNA_sequenceGAGTGGATTCTGAGGACCGGGAGTGGATTCTGAGGACCGG
PAMAGGAGG
NameUSP39_86USP39_86
Sample_IDBGHcLV43-61BGHcLV43-62
transduction_Date6/6/246/6/24
daysD6D6
RBP_nameUSP39USP39
qPCR_result0.00.0
Ave_qPCR0.0
RT-qPCR_primer-Fagctcatcattccccaagtg
RT-qPCR_primer-Raggcaacttggtaagctgga
protein_conc04701
WB_result63.663.3
Ave_WB63.4
WB_DONE_date6/21/24
MW65kd
IP
antibody_Cat#23303Slot # 1
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID76367637




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHcLV43-61BGHcLV43-62
Sample_IDBGHcLV43-61BGHcLV43-62
Sample Name
Sample NameUSP39-BGHcLV43-61USP39-BGHcLV43-62
RBPUSP39USP39
Cell_LineHepG2HepG2
Exp UID
StatusSequencedSequenced
Status_date2024-10-272024-10-27
ProjectENCORE2ENCORE2
Note
ID1327613277




Library-Prep Information
BGHcLV43-61BGHcLV43-62
Sample #4950
Sample NameUSP39-BGHcLV43-61USP39-BGHcLV43-62
Sample_Name_Alias
Index Well PositionA12B12
Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
LibPrep_date2024-07-222024-07-22
Lib_IDLib-240722Lib-240722
Tecan_Location
Tecan
Tecan_date
Size_bp299300
Peak_Molarity101.0084.70
libSampleQC_DNA_WellDNA_Library_set74/set2/A7.pngDNA_Library_set74/set2/B7.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set74/set1/E12.pngRNA_Library_set74/set1/F12.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-07-232024-07-23
Sample_IDBGHcLV43-61BGHcLV43-62
RBPUSP39USP39
Batch_IDBGHcLV43BGHcLV43
WB_result63.60063.300
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44084409




Sequencing Information
BGHcLV43-61BGHcLV43-62
Sample_IDBGHcLV43-61BGHcLV43-62
Sample NameUSP39-BGHcLV43-61USP39-BGHcLV43-62
Pool IDPool-240723Pool-240723
LocalServer_folderset74set74
total_reads40,243,49849,666,147
total_aligned_reads36,523,77446,075,880
unique_aligned_reads34,300,00243,313,313
percent_uniqueAligned0.852310.87209
correlation_replicates0.9989730.998973
spikein_reads32,86020,024
percent_spikeins0.000820.00040
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID32753276




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database