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BRD4 RNA-Seq in HepG2



BRD4      CRISPR in HepG2      Control:

General Information
RBPBRD4
Cell_LineHepG2
MethodCRISPR
Exp_NameBRD4-BGHcLV43-HepG2
ENCODE_series_ID
Batch_IDBGHcLV43
Pool IDPool-240723
Local_Set_Nameset74
ENCODE_KD_Exp_ID
ENCODE_CN_Exp_ID
Rep1BRD4-BGHcLV43-7
Rep2BRD4-BGHcLV43-8
CN1NT-BGHcLV43-1
CN2NT-BGHcLV43-2
Rep1_qPCR60.2
Rep2_qPCR55.7
Rep1_WB89.7
Rep2_WB86.2
Antibody Cat#83375S
Antibody Lot#lot # 1
Antibody DCC ID
StatusSubmitted
ProjectENCORE2
ID1570




Experiment Information (Status: Sequenced)
BGHcLV43-7BGHcLV43-7BGHcLV43-8BGHcLV43-8
idx1375137513761376
TRCN#_or_BGC#BGC#0001115BGC#0001115BGC#0001115BGC#0001115
shRNA_or_gRNA_sequenceGGGAACAATAAAGAAGCGCTGGGAACAATAAAGAAGCGCTGGGAACAATAAAGAAGCGCTGGGAACAATAAAGAAGCGCT
PAMTGGTGGTGGTGG
NameBRD4_85BRD4_85BRD4_85BRD4_85
Sample_IDBGHcLV43-7BGHcLV43-7BGHcLV43-8BGHcLV43-8
transduction_Date6/6/246/6/246/6/246/6/24
daysD6D6D6D6
RBP_nameBRD4BRD4BRD4BRD4
qPCR_result60.260.255.755.7
Ave_qPCR57.9
RT-qPCR_primer-Facccacagaagaaaccgagaacccacagaagaaaccgaga
RT-qPCR_primer-Rtgtgtttggtaccgtggaaatgtgtttggtaccgtggaaa
protein_conc2761276133823382
WB_result89.788.186.287.2
Ave_WB88.087.7
WB_DONE_date6/13/246/13/24
MW200,110kd200,110kd200KD110KD
IP
antibody_Cat#83375S83375Slot # 1lot # 1
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM0000
Rep2_TPM0000
ActionReadyReady
Library_start_date
repeat_library
Note
ID7572757475737575




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHcLV43-7BGHcLV43-7BGHcLV43-8BGHcLV43-8
Sample_IDBGHcLV43-7BGHcLV43-7BGHcLV43-8BGHcLV43-8
Sample Name
Sample NameBRD4-BGHcLV43-7BRD4-BGHcLV43-8
RBPBRD4BRD4BRD4BRD4
Cell_LineHepG2HepG2HepG2HepG2
Exp UID
StatusSequencedNotSatisfiedSequencedNotSatisfied
Status_date2024-10-272024-07-162024-10-272024-07-16
ProjectENCORE2ENCORE2ENCORE2ENCORE2
Note
ID13230132841323113285




Library-Prep Information
BGHcLV43-7BGHcLV43-8
Sample #34
Sample NameBRD4-BGHcLV43-7BRD4-BGHcLV43-8
Sample_Name_Alias
Index Well PositionC06D06
Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
LibPrep_date2024-07-222024-07-22
Lib_IDLib-240722Lib-240722
Tecan_Location
Tecan
Tecan_date
Size_bp302301
Peak_Molarity118.0091.60
libSampleQC_DNA_WellDNA_Library_set74/set1/C1.pngDNA_Library_set74/set1/D1.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set74/set1/G6.pngRNA_Library_set74/set1/H6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-07-232024-07-23
Sample_IDBGHcLV43-7BGHcLV43-8
RBPBRD4BRD4
Batch_IDBGHcLV43BGHcLV43
WB_result89.70086.200
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID43624363




Sequencing Information
BGHcLV43-7BGHcLV43-8
Sample_IDBGHcLV43-7BGHcLV43-8
Sample NameBRD4-BGHcLV43-7BRD4-BGHcLV43-8
Pool IDPool-240723Pool-240723
LocalServer_folderset74set74
total_reads34,422,25831,438,588
total_aligned_reads31,964,49529,157,974
unique_aligned_reads30,105,03627,449,051
percent_uniqueAligned0.874580.87310
correlation_replicates0.9991430.999143
spikein_reads34,6728,616
percent_spikeins0.001010.00027
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID32293230




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database