VPS54

General Information

Gene Name : VPS54
Gene ID : ENSG00000143952.19
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VPS54)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS54	ENSG00000143952.19	11.08	8.61	9.84	ENCSR000AEF
HepG2	VPS54	ENSG00000143952.19	26.60	49.04	37.82	ENCSR985KAT
K562	VPS54	ENSG00000143952.19	9.94	10.49	10.21	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS54 is not avaliable on ENCORE database.

Proteins bound to RNA

VPS54 RNA is bound by 31 proteins.

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eCLIP assay for VPS54 is not avaliable on ENCORE database.

31 proteins are bound to VPS54 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	64195843	64195885	-	intron-Distal	4.89022	51.86246	HepG2	PTBP1
chr2	64199299	64199349	-	CDS,intron-Distal,intron-Proximal	3.58287	31.38634	HepG2	BCLAF1
chr2	64196092	64196125	-	CDS,intron-Distal	3.61979	25.48604	HepG2	BCLAF1
chr2	64169639	64169669	-	CDS,intron-Distal	4.40944	23.30628	HepG2	BCLAF1
chr2	64195885	64195922	-	intron-Distal	4.54302	22.65103	HepG2	PTBP1
chr2	64169621	64169639	-	CDS,intron-Distal	4.02242	21.94873	HepG2	BCLAF1
chr2	64189153	64189223	-	CDS,intron-Distal,intron-Proximal	4.92189	20.15752	HepG2	PRPF8
chr2	64161088	64161125	-	CDS,intron-Distal	3.50737	18.76950	HepG2	BCLAF1
chr2	64165410	64165443	-	intron-Distal	3.87185	17.52415	HepG2	HNRNPL
chr2	64162152	64162228	-	intron-Distal	4.38452	17.46638	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 176 entries

eCLIP assay for VPS54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS54 is not available on ENCORE database.
115 RBPs can affect the levels of VPS54.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

115 RBPs can affect the gene expression of VPS54 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS54	ENSG00000143952.15	2158.13160	5591.55130	-1.37350	89.98400	88.01100	HepG2	NELFE
VPS54	ENSG00000143952.15	770.49720	2712.21460	-1.81560	64.02100	61.77730	HepG2	HNRNPA1
VPS54	ENSG00000143952.15	2726.28080	5459.97100	-1.00200	56.90890	55.37850	HepG2	SRSF1
VPS54	ENSG00000143952.15	2086.61270	4616.32330	-1.14560	51.40250	49.71860	HepG2	RBM22
VPS54	ENSG00000143952.15	2477.28390	4526.91670	-0.86980	39.97240	38.56230	HepG2	SSB
VPS54	ENSG00000143952.15	1059.58260	2748.73880	-1.37530	39.41780	37.31380	HepG2	DDX21
VPS54	ENSG00000143952.15	1060.35980	2667.90770	-1.33120	31.32830	28.66020	HepG2	ADAR
VPS54	ENSG00000143952.15	1935.73550	3112.36060	-0.68510	28.78830	27.07550	HepG2	SMN1
VPS54	ENSG00000143952.15	1755.90730	3044.17080	-0.79380	26.47290	24.91010	HepG2	DKC1
VPS54	ENSG00000143952.15	2964.17170	4598.83770	-0.63360	26.36640	24.76880	HepG2	SUCLG1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 133 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

29 RBPs can affect the splicing of VPS54 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	VPS54	ENSG00000143952.15	chr2	-	64140356	64140444	64139673	64139795	64141315	64141421	-0.07300	0.00071	excluded	HepG2	NCBP2
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059	64140356	64140444	64141315	64141421	0.17000	0.00033	included	HepG2	HNRNPU
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.28100	0.00000	shorter	HepG2	HNRNPU
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.17700	0.00194	shorter	HepG2	NKRF
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.27700	0.00000	shorter	HepG2	AKAP1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.23500	0.00015	shorter	HepG2	MATR3
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.39600	0.00005	shorter	K562	U2AF2
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.40800	0.00000	shorter	HepG2	U2AF2
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.29700	0.00000	shorter	HepG2	TIAL1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021	64208779	64208985	64210997	64211153	-0.20100	0.00340	shorter	HepG2	PCBP2

Showing 1 to 10 of 39 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS54

General Information

Functions

Localization

Domains (AlphaFold: VPS54)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS54 is not avaliable on ENCORE database.

31 proteins are bound to VPS54 RNA:

eCLIP assay for VPS54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

115 RBPs can affect the gene expression of VPS54 :

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

29 RBPs can affect the splicing of VPS54 :

The Knockdown/knockout RNA-Seq assay for VPS54 is not avaliable on ENCORE database.